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non port: biology/cd-hit/Makefile
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Number of commits found: 22

Sat, 12 Aug 2023
[ 01:37 Piotr Kubaj (pkubaj) search for other commits by this committer ]    commit hash:6c5416c5894736424e0ba2efd063927aeb512bf7  commit hash:6c5416c5894736424e0ba2efd063927aeb512bf7  commit hash:6c5416c5894736424e0ba2efd063927aeb512bf7  6c5416c 
biology/cd-hit: allow to build without GCC on libomp-less systems
Wed, 7 Sep 2022
[ 21:10 Stefan E├čer (se) search for other commits by this committer ]    commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52  commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52  commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52  b7f0544  (Only the first 10 of 27931 ports in this commit are shown above. View all ports for this commit)
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
Wed, 27 Apr 2022
[ 13:22 Piotr Kubaj (pkubaj) search for other commits by this committer ]    commit hash:74016ad026a87ddbf04a85e76c9bdb2ecbbffcf5  commit hash:74016ad026a87ddbf04a85e76c9bdb2ecbbffcf5  commit hash:74016ad026a87ddbf04a85e76c9bdb2ecbbffcf5  74016ad 
biology/cd-hit: check for omp.h on all architectures
Sun, 21 Nov 2021
[ 13:26 Piotr Kubaj (pkubaj) search for other commits by this committer ]    commit hash:6b73ac038575fd8031219a1a554483087a8940c2  commit hash:6b73ac038575fd8031219a1a554483087a8940c2  commit hash:6b73ac038575fd8031219a1a554483087a8940c2  6b73ac0 
biology/cd-hit: fix build on armv7

Same issue as on powerpc.
Thu, 10 Jun 2021
[ 00:35 Piotr Kubaj (pkubaj) search for other commits by this committer ]    commit hash:8aae744d04920573ee2c3c34390c268a05beff39  commit hash:8aae744d04920573ee2c3c34390c268a05beff39  commit hash:8aae744d04920573ee2c3c34390c268a05beff39  8aae744 
biology/cd-hit: fix build on powerpc

LLVM on powerpc doesn't have libomp:
cdhit-common.c++:36:9: fatal error: 'omp.h' file not found
Wed, 7 Apr 2021
[ 08:09 Mathieu Arnold (mat) search for other commits by this committer ]    commit hash:cf118ccf875508b9a1c570044c93cfcc82bd455c  commit hash:cf118ccf875508b9a1c570044c93cfcc82bd455c  commit hash:cf118ccf875508b9a1c570044c93cfcc82bd455c  cf118cc  (Only the first 10 of 8873 ports in this commit are shown above. View all ports for this commit)
One more small cleanup, forgotten yesterday.
Reported by:	lwhsu
Tue, 6 Apr 2021
[ 14:31 Mathieu Arnold (mat) search for other commits by this committer ]    commit hash:305f148f482daf30dcf728039d03d019f88344eb  commit hash:305f148f482daf30dcf728039d03d019f88344eb  commit hash:305f148f482daf30dcf728039d03d019f88344eb  305f148  (Only the first 10 of 29333 ports in this commit are shown above. View all ports for this commit)
Remove # $FreeBSD$ from Makefiles.
Mon, 11 Jan 2021
[ 16:55 jwb search for other commits by this committer ] Original commit   Revision:561228
biology/cd-hit: Drop dependency on gcc

Simply remove compiler:openmp
Builds with base compiler on amd64, i386, and powerpc64

PR:             port/247753, ports/252379
Fri, 26 Jul 2019
[ 20:46 gerald search for other commits by this committer ] Original commit   Revision:507372 (Only the first 10 of 3853 ports in this commit are shown above. View all ports for this commit)
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
Thu, 14 Mar 2019
[ 23:59 jwb search for other commits by this committer ] Original commit   Revision:495746
biology/cd-hit: Upgrade to 4.8.1

Convert Makefile REINPLACE to patch for sending upstream
Wed, 12 Dec 2018
[ 01:35 gerald search for other commits by this committer ] Original commit   Revision:487272 (Only the first 10 of 3168 ports in this commit are shown above. View all ports for this commit)
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590
Sun, 29 Jul 2018
[ 22:18 gerald search for other commits by this committer ] Original commit   Revision:475857 (Only the first 10 of 1480 ports in this commit are shown above. View all ports for this commit)
Bump PORTREVISION for ports depending on the canonical version of GCC
in the ports tree (via Mk/bsd.default-versions.mk and lang/gcc) which
has now moved from GCC 6 to GCC 7 by default.

This includes ports
 - featuring USE_GCC=yes or USE_GCC=any,
 - featuring USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and those
 - with USES=compiler specifying one of openmp, nestedfct, c11, c++0x,
   c++11-lib, c++11-lang, c++14-lang, c++17-lang, or gcc-c++11-lib.

PR:		222542
Sat, 10 Mar 2018
[ 17:46 gerald search for other commits by this committer ] Original commit   Revision:464084 (Only the first 10 of 1104 ports in this commit are shown above. View all ports for this commit)
Bump PORTREVISIONs of all users of math/mpc that we just updated to
version 1.1.0 (via revision 464079).
Wed, 31 Jan 2018
[ 01:07 jwb search for other commits by this committer ] Original commit   Revision:460452 (Only the first 10 of 56 ports in this commit are shown above. View all ports for this commit)
Multiple ports:
Change maintainer email bacon4000@gmail.com to jwb@FreeBSD.org
Remove Created by comments for same user

Approved by: jrm (mentor)
Differential Revision:  https://reviews.freebsd.org/D14128
Sun, 10 Sep 2017
[ 20:55 gerald search for other commits by this committer ] Original commit   Revision:449591 (Only the first 10 of 1201 ports in this commit are shown above. View all ports for this commit)
Bump PORTREVISION for ports depending on the canonical version of GCC
(via Mk/bsd.default-versions.mk and lang/gcc) which has moved from
GCC 5.4 to GCC 6.4 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c++11-lib, c++11-lang,
   c++14-lang, c++0x, c11, or gcc-c++11-lib.

PR:		219275
Sat, 1 Apr 2017
[ 15:23 gerald search for other commits by this committer ] Original commit   Revision:437439 (Only the first 10 of 1118 ports in this commit are shown above. View all ports for this commit)
Bump PORTREVISIONs for ports depending on the canonical version of GCC and
lang/gcc which have moved from GCC 4.9.4 to GCC 5.4 (at least under some
circumstances such as versions of FreeBSD or platforms).

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using using Mk/bsd.octave.mk which in turn has USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c++11-lib, c++14-lang,
   c++11-lang, c++0x, c11, or gcc-c++11-lib.

PR:		216707
Tue, 20 Dec 2016
[ 16:48 jrm search for other commits by this committer ] Original commit   Revision:429002
biology/cd-hit: Update to bug-fix release 4.6.6

Changes in version 4.6.6:
Bug fix for cd-hit-dup in variable length input when write out R1 reads

Changes in version 4.6.5:
Add filter for -aL option so that short sequences will be skipped if not
satisfy representative sequences' -aL requirement. This will make compute
faster in clustering settings where sequences in the same cluster are
required to have similar length using -aL -AL option (e.g. -aL 0.9).

Approved by:	AMDmi3 (mentor) swills (mentor)
Differential Revision:	https://reviews.freebsd.org/D8186
Fri, 2 Dec 2016
[ 11:58 mat search for other commits by this committer ] Original commit   Revision:427552 (Only the first 10 of 119 ports in this commit are shown above. View all ports for this commit)
Do not use post-stage.  Use post-install instead.

The only reason to use post-stage is because the port needs to do
"things" at a later time, like some plist manipulation.
While there, fold post-install in do-install targets when they are
defined.

PR:		214780
Submitted by:	mat
Exp-run by:	antoine
Sponsored by:	Absolight
Sun, 20 Nov 2016
[ 09:38 gerald search for other commits by this committer ] Original commit   Revision:426566 (Only the first 10 of 364 ports in this commit are shown above. View all ports for this commit)
Bump PORTREVISIONS for ports depending on the canonical version of GCC and
lang/gcc which have moved from GCC 4.8.5 to GCC 4.9.4 (at least under some
circumstances such as versions of FreeBSD or platforms).

In particular that is ports with USE_GCC=yes, USE_GCC=any, or one of
gcc-c++11-lib, openmp, nestedfct, c++11-lib as well as c++14-lang,
c++11-lang, c++0x, c11 requested via USES=compiler.
Fri, 11 Dec 2015
[ 08:48 miwi search for other commits by this committer ] Original commit   Revision:403506 (Only the first 10 of 54 ports in this commit are shown above. View all ports for this commit)
- Update maintainer mail address
- Update/Remove MASTER_SITE

PR:		204755
Submitted by:	 jwbacon@tds.net (maintainer)
Approved by:	mat (mentor)
Differential Revision:	D4493
Sat, 19 Sep 2015
[ 13:12 wen search for other commits by this committer ] Original commit   Revision:397322
- Use compiler:openmp instead of gcc
- Minor cleanup

Reported by:	danfe@
[ 11:16 wen search for other commits by this committer ] Original commit   Revision:397318
CD-HIT is a very widely used program for clustering and comparing protein or
nucleotide sequences.

WWW: http://weizhong-lab.ucsd.edu/cd-hit/

PR:		203183
Submitted by:	jwbacon@tds.net

Number of commits found: 22