non port: biology/canu/Makefile |
Number of commits found: 32 |
Thursday, 20 Jul 2023
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17:42 Muhammad Moinur Rahman (bofh)
biology/canu: Fix build with llvm16
- Pet portclippy
Approved by: portmgr (blanket)
Sponsored by: The FreeBSD Foundation
d92c080 |
11:20 Jason W. Bacon (jwb)
biology/canu: Fix build under clang 16
Also add cpu_any.c to theoretically support any 64-bit CPU
Drop unused simde patches
Reported by: pkg-fallout
2908335 |
Tuesday, 4 Apr 2023
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18:10 Muhammad Moinur Rahman (bofh)
*/*: Refactor java/openjdk7 removal
- java/openjdk7* has been removed from the tree since 2022-09-03 however
the relevant codebases in bsd.java.mk has not been removed and the
consumers has also not been updated to use the next jdk version. This
commit updates all relevant consumers to use JAVA_VERSION=8 instead of
JAVA_VERSION=1.7
- Since the introduction of jdk version 18 it looks like similar with
jdk version 8(java version string 1.8). This is prone to error as it
looks similar and is only seperated by a '.'. Remove using
JAVA_VERSION with dotted fomat of java version string and update all
consumers to utilize version 8 instead of 1.8.
Approved by: portmgr (blanket)
4cda17a |
Wednesday, 7 Sep 2022
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21:10 Stefan Eßer (se)
Add WWW entries to port Makefiles
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.
Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.
There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
This commit implements such a proposal and moves one of the WWW: entries
of each pkg-descr file into the respective port's Makefile. A heuristic
attempts to identify the most relevant URL in case there is more than
one WWW: entry in some pkg-descr file. URLs that are not moved into the
Makefile are prefixed with "See also:" instead of "WWW:" in the pkg-descr
files in order to preserve them.
There are 1256 ports that had no WWW: entries in pkg-descr files. These
ports will not be touched in this commit.
The portlint port has been adjusted to expect a WWW entry in each port
Makefile, and to flag any remaining "WWW:" lines in pkg-descr files as
deprecated.
Approved by: portmgr (tcberner)
b7f0544 |
Friday, 12 Aug 2022
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14:46 Dima Panov (fluffy)
*/*: bump all consumers after recent boost upgrade
4cf39de |
Sunday, 22 May 2022
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20:17 Dima Panov (fluffy)
devel/boost-all: bump all library consumers after boost upgrade
PR: 246106
b082b3d |
Monday, 20 Dec 2021
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12:59 Antoine Brodin (antoine)
biology/canu: fix CATEGORIES
b2dab38 |
Sunday, 19 Dec 2021
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21:06 Jason W. Bacon (jwb)
biology/canu: Update to 2.2
FreeBSD port: Add support for aarch64 and powerpc64 using simde
Not yet supported upstream
Several upstream bug fixes and minor enhancements since 2.1
Changes: https://github.com/marbl/canu/tags
b9105b7 |
Wednesday, 7 Apr 2021
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08:09 Mathieu Arnold (mat)
One more small cleanup, forgotten yesterday.
Reported by: lwhsu
cf118cc |
Tuesday, 6 Apr 2021
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14:31 Mathieu Arnold (mat)
Remove # $FreeBSD$ from Makefiles.
305f148 |
Monday, 11 Jan 2021
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16:51 jwb
biology/canu: Drop dependency on gcc
Replace compiler:openmp with compiler:c++11-lang and localbase
PR: port/247753, ports/252379
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Monday, 14 Sep 2020
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22:27 jwb
biology/canu: Upgrade to 2.1
Numerous functional improvements for ease of use and output quality
A few bug fixes
Reported by: portscout
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Sunday, 17 May 2020
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02:25 linimon
Mark as BROKEN on powerpc64:
utgcns/libboost/boost/smart_ptr/detail/sp_counted_impl.hpp:81:5: error:
'get_deleter' declared as a 'virtual' field
This may have something to do with compiler:openmp in USES. However,
it has broken for more than 6 months at this point.
Approved by: portmgr (tier-2 blanket)
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Friday, 20 Mar 2020
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18:14 jwb
biology/canu: Upgrade to 2.0
Several routine enhancements and bug fixes
Reported by: portscout
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Wednesday, 11 Dec 2019
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17:53 jbeich
devel/boost-*: update to 1.72.0
Changes: http://www.boost.org/users/history/version_1_72_0.html
PR: 241449
Exp-run by: antoine
Differential Revision: https://reviews.freebsd.org/D22136
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Friday, 8 Nov 2019
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14:03 jwb
biology/canu: Upgrade to 1.9
Numerous bug fixes and enhancements
Reported by: portscout
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Monday, 19 Aug 2019
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15:35 jbeich
devel/boost-*: update to 1.71.0
Changes: http://www.boost.org/users/history/version_1_71_0.html
PR: 238827
Exp-run by: antoine
Differential Revision: https://reviews.freebsd.org/D20774
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Friday, 26 Jul 2019
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20:46 gerald
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.
This includes ports
- with USE_GCC=yes or USE_GCC=any,
- with USES=fortran,
- using Mk/bsd.octave.mk which in turn features USES=fortran, and
- with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.
PR: 238330
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Thursday, 18 Apr 2019
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12:15 jwb
biology/canu: Fix build on powerpc64 and aarch64
Should also work on powerpc and arm*, but unable to test
PR: 237105
Reported by: pkubaj
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Friday, 12 Apr 2019
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06:36 jbeich
devel/boost-*: update to 1.70.0
Changes: http://www.boost.org/users/history/version_1_70_0.html
PR: 235956
Exp-run by: antoine
Differential Revision: https://reviews.freebsd.org/D19303
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Wednesday, 12 Dec 2018
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01:35 gerald
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.
This includes ports
- with USE_GCC=yes or USE_GCC=any,
- with USES=fortran,
- using Mk/bsd.octave.mk which in turn features USES=fortran, and
- with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.
PR: 231590
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00:15 jbeich
devel/boost-*: update to 1.69.0
Changes: http://www.boost.org/users/history/version_1_69_0.html
PR: 232525
Exp-run by: antoine
Differential Revision: https://reviews.freebsd.org/D17645
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Sunday, 4 Nov 2018
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14:29 jwb
biology/canu: Upgrade to 1.8, add experimental SLURM integration
Solves build issue with gcc8.
PR: 232930
Reported by: gerald
Approved by: jrm (mentor, implicit)
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Thursday, 9 Aug 2018
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06:58 jbeich
devel/boost-*: update to 1.68.0
- Switch to C++14 for libboost_system to support C++14 consumers
Changes: http://www.boost.org/users/history/version_1_68_0.html
PR: 229569
Exp-run by: antoine
Differential Revision: https://reviews.freebsd.org/D16165
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Sunday, 29 Jul 2018
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22:18 gerald
Bump PORTREVISION for ports depending on the canonical version of GCC
in the ports tree (via Mk/bsd.default-versions.mk and lang/gcc) which
has now moved from GCC 6 to GCC 7 by default.
This includes ports
- featuring USE_GCC=yes or USE_GCC=any,
- featuring USES=fortran,
- using Mk/bsd.octave.mk which in turn features USES=fortran, and those
- with USES=compiler specifying one of openmp, nestedfct, c11, c++0x,
c++11-lib, c++11-lang, c++14-lang, c++17-lang, or gcc-c++11-lib.
PR: 222542
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Thursday, 21 Jun 2018
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23:52 linimon
Mark as broken on aarch64, and, where appropriate, armvX.
While here, pet portlint.
Approved by: portmgr (tier-2 blanket)
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Thursday, 26 Apr 2018
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04:16 jwb
biology/canu: Upgrade to 1.7 release
Approved by: jrm (mentor)
Differential Revision: https://reviews.freebsd.org/D15201
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Wednesday, 18 Apr 2018
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13:57 jbeich
devel/boost-*: update to 1.67.0
Changes: http://www.boost.org/users/history/version_1_67_0.html
PR: 227427
Exp-run by: antoine
Differential Revision: https://reviews.freebsd.org/D15030
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Saturday, 10 Mar 2018
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17:46 gerald
Bump PORTREVISIONs of all users of math/mpc that we just updated to
version 1.1.0 (via revision 464079).
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Thursday, 18 Jan 2018
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04:11 jbeich
devel/boost-*: update to 1.66.0
Changes: http://www.boost.org/users/history/version_1_66_0.html
PR: 223922
Exp-run by: antoine
Differential Revision: https://reviews.freebsd.org/D13279
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Friday, 22 Dec 2017
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14:14 jwb
biology/canu: Replace += with = for depends
Approved by: jrm
Differential Revision: https://reviews.freebsd.org/D13574
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01:30 jwb
[new port] biology/canu: Single molecule sequence assembler
Approved by: jrm (mentor) or wen (mentor)
Differential Revision: https://reviews.freebsd.org/D13574
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Number of commits found: 32 |