| non port: biology/bolt-lmm/Makefile |
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SVNWeb
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Number of commits found: 21 |
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Thu, 27 Apr 2023
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[ 18:25 Dima Panov (fluffy)  ]    3e45e8e (Only the first 10 of 184 ports in this commit are shown above.  )
*/*: bump all direct Boost cunsumers
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Sun, 23 Apr 2023
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[ 09:09 Gerald Pfeifer (gerald) ] 8d3e020 (Only the first 10 of 2091 ports in this commit are shown above. )
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
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Mon, 16 Jan 2023
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[ 19:32 Dima Panov (fluffy) ] e1287d0 (Only the first 10 of 184 ports in this commit are shown above. )
*/*: bump libboost*.so libraries consumert after Boost upgrade
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Wed, 7 Sep 2022
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[ 21:10 Stefan Eßer (se) ] b7f0544 (Only the first 10 of 27931 ports in this commit are shown above. )
Add WWW entries to port Makefiles
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.
Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.
There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above )
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Fri, 12 Aug 2022
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[ 14:46 Dima Panov (fluffy) ] 4cf39de (Only the first 10 of 722 ports in this commit are shown above. )
*/*: bump all consumers after recent boost upgrade
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Sun, 22 May 2022
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[ 20:17 Dima Panov (fluffy) ] b082b3d (Only the first 10 of 280 ports in this commit are shown above. )
devel/boost-all: bump all library consumers after boost upgrade
PR: 246106
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Thu, 21 Apr 2022
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[ 17:11 Piotr Kubaj (pkubaj) ] 6812895
biology/bolt-lmm: remove unnecessary CFLAGS_powerpc64
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Sun, 17 Apr 2022
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[ 11:05 Piotr Kubaj (pkubaj) ] b48c881
biology/bolt-lmm: remove unnecessary flags for powerpc64le
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Sun, 20 Mar 2022
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[ 15:29 Jason W. Bacon (jwb) ] 0297052
biology/bolt-lmm: Update to 2.3.6
Changes: https://alkesgroup.broadinstitute.org/BOLT-LMM/\
BOLT-LMM_manual.html#x1-60002.1
Also fixed build on aarch64: Replaced non-portable _mm_malloc() with
aligned_alloc()
Reported by: pkg-fallout
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Sun, 6 Feb 2022
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[ 18:36 Stefan Eßer (se) ] bdd2d4a (Only the first 10 of 69 ports in this commit are shown above. )
Update CONFLICTS definitions in categories a* to c*
Update the CONFLICTS definitions of ports in the following categories:
- accessibility
- archivers
- audio
- benchmarks
- biology
- cad
- chinese
- comms
- converters
An attempt has been made to use generic conflicts patterns that do not
have to be updated whenever a new version of a conflicting port is
added to the ports system.
There is a misunderstanding that the port being built/installed has to
be omitted from the conflicts pattern. This is not true - the port
being built is implicitly non-conflicting due to logic in bsd.port.mk.
Approved by: portmgr (implicit)
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Wed, 7 Apr 2021
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[ 08:09 Mathieu Arnold (mat) ] cf118cc (Only the first 10 of 8873 ports in this commit are shown above. )
One more small cleanup, forgotten yesterday.
Reported by: lwhsu
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Tue, 6 Apr 2021
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[ 14:31 Mathieu Arnold (mat) ] 305f148 (Only the first 10 of 29333 ports in this commit are shown above. )
Remove # $FreeBSD$ from Makefiles.
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Sun, 27 Sep 2020
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[ 07:41 linimon ]  
Canonicalize powerpc64le CXXFLAGS to be the same as powerpc64.
Approved by: portmgr (tier-2 blanket)
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Wed, 6 May 2020
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[ 16:11 yuri ] (Only the first 10 of 45 ports in this commit are shown above. )
Bump 46 ports depending on math/openblas because the after the recent
math/openblas update the library name changed in openblas.
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Thu, 30 Jan 2020
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[ 14:17 swills ] (Only the first 10 of 90 ports in this commit are shown above. )
Fix math/openblas and bump dependent ports
* Fix build on i386 [1]
* Fix science/code_saturne build with new openblas [2]
* Avoid installing private headers [3]
* Prevent build from optimizing for host by correcting build confg [4]
* Bump portrevision of dependent ports [5]
This is correcting issues from r523749 [1][2][4] and r515970 [3]
PR: 231371
Reported by: build cluster [1]
Reported by: Dima Pasechnik <dimpase+freebsd@gmail.com> [2]
Reported by: many [5]
Reviewed by: mat, bapt
Approved by: implicit, since this is a build fix
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Wed, 11 Dec 2019
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[ 17:53 jbeich ] (Only the first 10 of 417 ports in this commit are shown above. )
devel/boost-*: update to 1.72.0
Changes: http://www.boost.org/users/history/version_1_72_0.html
PR: 241449
Exp-run by: antoine
Differential Revision: https://reviews.freebsd.org/D22136
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Mon, 19 Aug 2019
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[ 15:35 jbeich ] (Only the first 10 of 412 ports in this commit are shown above. )
devel/boost-*: update to 1.71.0
Changes: http://www.boost.org/users/history/version_1_71_0.html
PR: 238827
Exp-run by: antoine
Differential Revision: https://reviews.freebsd.org/D20774
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Tue, 13 Aug 2019
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[ 15:30 jwb ]
biology/bolt-lmm: Upgrade to 2.3.4
Remove previously upstreamed patches
New Makefile patch that preserves default behavior and should be palatable
to upstream
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Sun, 4 Aug 2019
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[ 23:48 jwb ]
PR: 239613
Submitted by: pkubaj
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Fri, 26 Jul 2019
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[ 20:46 gerald ] (Only the first 10 of 3853 ports in this commit are shown above. )
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.
This includes ports
- with USE_GCC=yes or USE_GCC=any,
- with USES=fortran,
- using Mk/bsd.octave.mk which in turn features USES=fortran, and
- with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.
PR: 238330
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Sun, 26 May 2019
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[ 03:36 jwb ] (Only the first 10 of 11 ports in this commit are shown above. )
biology/bolt-lmm: Mixed model association testing and variance component
analysis
The BOLT-LMM software package currently consists of two main algorithms, the
BOLT-LMM algorithm for mixed model association testing, and the BOLT-REML
algorithm for variance components analysis (i.e., partitioning of
SNP-heritability and estimation of genetic correlations).
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Number of commits found: 21 |
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