14:44 Dima Panov (fluffy) 

devel/boost: bump consumers after library update

    db61653

19:03 Thierry Thomas (thierry) 

*/*: bump PORTREVISION after the upgrade of OpenBLAS

PR:		273219

    ab17137

14:36 Dima Panov (fluffy) 

devel/boost*: bump all consumers after 1.83.0

    21d8008

18:25 Dima Panov (fluffy) 

*/*: bump all direct Boost cunsumers

    3e45e8e

09:09 Gerald Pfeifer (gerald) 

*: Bump PORTREVISIONs for math/mpc update to 1.3.1

    8d3e020

19:32 Dima Panov (fluffy) 

*/*:	bump libboost*.so libraries consumert after Boost upgrade

    e1287d0

21:10 Stefan Eßer (se) 

Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.

This commit implements such a proposal and moves one of the WWW: entries
of each pkg-descr file into the respective port's Makefile. A heuristic
attempts to identify the most relevant URL in case there is more than
one WWW: entry in some pkg-descr file. URLs that are not moved into the
Makefile are prefixed with "See also:" instead of "WWW:" in the pkg-descr
files in order to preserve them.

There are 1256 ports that had no WWW: entries in pkg-descr files. These
ports will not be touched in this commit.

The portlint port has been adjusted to expect a WWW entry in each port
Makefile, and to flag any remaining "WWW:" lines in pkg-descr files as
deprecated.

Approved by:		portmgr (tcberner)

    b7f0544

14:46 Dima Panov (fluffy) 

*/*: bump all consumers after recent boost upgrade

    4cf39de

20:17 Dima Panov (fluffy) 

devel/boost-all: bump all library consumers after boost upgrade

PR:	246106

    b082b3d

17:11 Piotr Kubaj (pkubaj) 

biology/bolt-lmm: remove unnecessary CFLAGS_powerpc64

    6812895

11:05 Piotr Kubaj (pkubaj) 

biology/bolt-lmm: remove unnecessary flags for powerpc64le

    b48c881

15:29 Jason W. Bacon (jwb) 

biology/bolt-lmm: Update to 2.3.6

Changes: https://alkesgroup.broadinstitute.org/BOLT-LMM/\
	 BOLT-LMM_manual.html#x1-60002.1

Also fixed build on aarch64: Replaced non-portable _mm_malloc() with
aligned_alloc()

Reported by:    pkg-fallout

    0297052

18:36 Stefan Eßer (se) 

Update CONFLICTS definitions in categories a* to c*

Update the CONFLICTS definitions of ports in the following categories:

- accessibility
- archivers
- audio
- benchmarks
- biology
- cad
- chinese
- comms
- converters

An attempt has been made to use generic conflicts patterns that do not
have to be updated whenever a new version of a conflicting port is
added to the ports system.

There is a misunderstanding that the port being built/installed has to
be omitted from the conflicts pattern. This is not true - the port
being built is implicitly non-conflicting due to logic in bsd.port.mk.

Approved by:	portmgr (implicit)

    bdd2d4a

08:09 Mathieu Arnold (mat) 

One more small cleanup, forgotten yesterday.
Reported by:	lwhsu

    cf118cc

14:31 Mathieu Arnold (mat) 

Remove # $FreeBSD$ from Makefiles.

    305f148

07:41 linimon 

Canonicalize powerpc64le CXXFLAGS to be the same as powerpc64.

Approved by:	portmgr (tier-2 blanket)

 

16:11 yuri 

Bump 46 ports depending on math/openblas because the after the recent
math/openblas update the library name changed in openblas.

 

14:17 swills 

Fix math/openblas and bump dependent ports

* Fix build on i386 [1]
* Fix science/code_saturne build with new openblas [2]
* Avoid installing private headers [3]
* Prevent build from optimizing for host by correcting build confg [4]
* Bump portrevision of dependent ports [5]

This is correcting issues from r523749 [1][2][4] and r515970 [3]

PR:		231371
Reported by:	build cluster [1]
Reported by:	Dima Pasechnik <dimpase+freebsd@gmail.com> [2]
Reported by:	many [5]
Reviewed by:	mat, bapt
Approved by:	implicit, since this is a build fix

 

17:53 jbeich 

devel/boost-*: update to 1.72.0

Changes:	http://www.boost.org/users/history/version_1_72_0.html
PR:		241449
Exp-run by:	antoine
Differential Revision:	https://reviews.freebsd.org/D22136

 

15:35 jbeich 

devel/boost-*: update to 1.71.0

Changes:	http://www.boost.org/users/history/version_1_71_0.html
PR:		238827
Exp-run by:	antoine
Differential Revision:	https://reviews.freebsd.org/D20774

 

15:30 jwb 

biology/bolt-lmm: Upgrade to 2.3.4

Remove previously upstreamed patches
New Makefile patch that preserves default behavior and should be palatable
to upstream

 

23:48 jwb 

PR:             239613
Submitted by:   pkubaj

 

20:46 gerald 

Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330

 

03:36 jwb 

biology/bolt-lmm: Mixed model association testing and variance component
analysis

The BOLT-LMM software package currently consists of two main algorithms, the
BOLT-LMM algorithm for mixed model association testing, and the BOLT-REML
algorithm for variance components analysis (i.e., partitioning of
SNP-heritability and estimation of genetic correlations).