non port: biology/biostar-tools/Makefile |
Number of commits found: 19 |
Friday, 16 Feb 2024
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13:42 Jason W. Bacon (jwb)
biology/biostar-tools: Update to 1.10.1_3
Add sra-tools to metaport deps on aarch64
Clean up pkg-desc
306ace3 |
Tuesday, 25 Apr 2023
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15:17 Christian Weisgerber (naddy)
audio/opus: bump consumers after update to 1.4
feb1fa3 |
Sunday, 23 Apr 2023
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09:09 Gerald Pfeifer (gerald)
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
8d3e020 |
Wednesday, 7 Sep 2022
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21:10 Stefan Eßer (se)
Add WWW entries to port Makefiles
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.
Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.
There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
This commit implements such a proposal and moves one of the WWW: entries
of each pkg-descr file into the respective port's Makefile. A heuristic
attempts to identify the most relevant URL in case there is more than
one WWW: entry in some pkg-descr file. URLs that are not moved into the
Makefile are prefixed with "See also:" instead of "WWW:" in the pkg-descr
files in order to preserve them.
There are 1256 ports that had no WWW: entries in pkg-descr files. These
ports will not be touched in this commit.
The portlint port has been adjusted to expect a WWW entry in each port
Makefile, and to flag any remaining "WWW:" lines in pkg-descr files as
deprecated.
Approved by: portmgr (tcberner)
b7f0544 |
Wednesday, 1 Dec 2021
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15:49 Jason W. Bacon (jwb)
biology/biostar-tools: Allow package build on non-amd64 systems
Only sra-tools is still non-portable, but it will take some time to
add support for other architectures. In the meantime, allow aarch64
and powerpc64 users to have a biostar-tools package.
70e9e19 |
Wednesday, 10 Nov 2021
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20:52 Jason W. Bacon (jwb)
biostar-tools: Add gffread to metaport deps
17f3e2c |
Saturday, 30 Oct 2021
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15:27 Jason W. Bacon (jwb)
biology/biostar-tools: Add biology/igv to metaport deps
4df7493e |
Thursday, 14 Oct 2021
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11:53 Jason W. Bacon (jwb)
biology/biostar-tools: Add py-deeptools to metaport deps
9d1d409 |
Tuesday, 12 Oct 2021
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16:43 Jason W. Bacon (jwb)
biology/biostar-tools: Add biology/bamutil to metaport deps
2e8996e |
Monday, 27 Sep 2021
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12:14 Jason W. Bacon (jwb)
biology/biostar-tools: Add biology/kallisto run depend to metaport
Also clean up other deps for consistency
96d32d8 |
Tuesday, 7 Sep 2021
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20:41 Jason W. Bacon (jwb)
biology/biostar-tools: Add biology/sam2pairwise to run deps
Displays pairwise alignments in a SAM file
c73e3a8 |
Monday, 6 Sep 2021
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14:27 Jason W. Bacon (jwb)
biology/biostar-tools: Add mafft, clustal-omega, pywgsim deps
Short-read alignment related tools
0ec8be4 |
Tuesday, 24 Aug 2021
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16:46 Jason W. Bacon (jwb)
biostar-tools: Update to 1.4.0
Add multiqc, flash, bfc, and jellyfish to metaport deps
1e0d8ce |
Friday, 13 Aug 2021
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14:16 Jason W. Bacon (jwb)
biostar-tools: Correct category for py-ont-fast5-api
361278d |
13:37 Jason W. Bacon (jwb)
biostar-tools: Add new deps to metaport
csvkit, miller: Tools for working with comma-separated data
py-ont-fast5-api: Library and tools for Oxford Nanopore fast5 files
3ed2dd5 |
Friday, 9 Jul 2021
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12:35 Jason W. Bacon (jwb)
biology/biostar-tools: Add erminej run depend to metaport
abcde30 |
Friday, 2 Jul 2021
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17:03 Jason W. Bacon (jwb)
biology/biostar-tools: Add biology/py-goatools to metaport depends
8b48d38 |
Tuesday, 22 Jun 2021
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18:00 Jason W. Bacon (jwb)
biostar-tools: Add sra-tools dependency to metaport
1885ed0 |
Friday, 18 Jun 2021
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21:56 Jason W. Bacon (jwb)
biology/biostar-tools: Meta-port for Biostar Handbook tools
Biostar-Tools is a metaport for installing all the tools necessary to work
through the Biostar Handbook, except for bedGrapToBigWig, which has license
restrictions. If you need bedGraphToBigWig, run
cd /usr/ports/biology/ucsc-userapps && make install clean
6df92a0 |
Number of commits found: 19 |