Port details on branch 2022Q2 |
- bioparser C++ header-only parsing library for several formats in bioinformatics
- 3.1.0 biology =0 3.1.0Version of this port present on the latest quarterly branch.
- Maintainer: yuri@FreeBSD.org
- Port Added: 2021-01-19 07:56:57
- Last Update: 2023-08-29 07:32:45
- Commit Hash: c776c74
- Also Listed In: devel
- License: MIT
- WWW:
- https://github.com/rvaser/bioparser
- Description:
- Bioparser is a C++ header only parsing library for several formats in
bioinformatics (FASTA/Q, MHAP/PAF/SAM), with support for zlib compressed files.
- ¦ ¦ ¦ ¦
- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - Dependency lines:
-
- bioparser>0:biology/bioparser
- To install the port:
- cd /usr/ports/biology/bioparser/ && make install clean
- To add the package, run one of these commands:
- pkg install biology/bioparser
- pkg install bioparser
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.- PKGNAME: bioparser
- Flavors: there is no flavor information for this port.
- distinfo:
- TIMESTAMP = 1693289836
SHA256 (rvaser-bioparser-3.1.0_GH0.tar.gz) = ddb48cb456c72cf2955adf056c9204caf65483ec0a5bbba47389bc30ed9fdd05
SIZE (rvaser-bioparser-3.1.0_GH0.tar.gz) = 1016738
Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- biosoup>0 : biology/biosoup
- cmake : devel/cmake-core
- ninja : devel/ninja
- Test dependencies:
-
- googletest>0 : devel/googletest
- Runtime dependencies:
-
- biosoup>0 : biology/biosoup
- This port is required by:
- for Build
-
- biology/rampler
- biology/spoa
Configuration Options:
- No options to configure
- Options name:
- biology_bioparser
- USES:
- cmake
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
|