14:51 Muhammad Moinur Rahman (bofh) 

biology/biolibc: Impelled to share/man

Approved by:    portmgr (blanket)

    57d1705

11:21 Jason W. Bacon (jwb) 

biology/biolibc: Update to 0.2.6

Updates for libxtend 0.2.0 API
Add full list of functions to biolibc(3) man page
Other documentation improvements
Changes: https://github.com/auerlab/biolibc/releases

    560a0d8

20:35 Jason W. Bacon (jwb) 

biology/biolibc: Update to 0.2.5

Make header files C++ compatible (extern C)
bl_chrom_name_cmp(): Support names with embedded digits, e.g. chr2p
bl_gff_extract_attribute(): Improve performance
gff -> gff3 to distinguish from past and future GFF specs
Silence some compiler warnings

Changes: https://github.com/auerlab/biolibc/releases

    c978aad

14:26 Jason W. Bacon (jwb) 

biology/biolibc: Update to 0.2.3

Expand use of tsv_read_field_malloc() to improve memory efficiency
Add SAM bit flag constants
Import SAM-GFF compare functions from diffanal
Updates for libxtend DSV API changes
Numerous minor bug fixes and enhancements

Changes:        https://github.com/auerlab/biolibc/tags

    603571c

21:35 Jason W. Bacon (jwb) 

biology/biolibc: Update to 0.2.2

Numerous bug fixes and enhancements
Serveral new functions
3 new classes
Cleaned up some API slop
Changes: https://github.com/auerlab/biolibc/tags

    258dc9d

19:45 Jason W. Bacon (jwb) 

biology/biolibc: Update to 0.2.1

Add orf.c with start/stop codon locators
Standardize BED and GFF APIs
Implement VCF input filtering
Eliminate mutator macros mirroring mutator functions
Numerous minor bug fixes and enhancements

Changes: https://github.com/auerlab/biolibc/releases/tag/0.2.1

    0646ba9

01:21 Jason W. Bacon (jwb) 

biology/biolibc: Update to 0.2.0

Major API overhaul
New classes for FASTA and FASTQ
Generate accessor and mutator functions for all classes
Generate man pages for all functions and macros
Export delimiter-separated-value class to libxtend

    9876430

15:05 Jason W. Bacon (jwb) 

biology/biolibc: Update to 0.1.3

Changes:        https://github.com/auerlab/biolibc/releases

    495634f

15:10 jwb 

biology/biolibc: Low-level high-performance bioinformatics library

Biolibc is a library of fast, memory-efficient, low-level functions for
processing biological data.  Like libc, it consists of numerous disparate,
general-purpose functions which could be used by a wide variety of
applications.  These include functions for streaming common file formats such
as SAM and VCF, string functions specific to bioinformatics, etc.