| non port: biology/biolibc-tools/Makefile |
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SVNWeb
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Number of commits found: 9 |
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Wed, 14 Dec 2022
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[ 00:11 Jason W. Bacon (jwb)  ]    9d72e41
biology/biolibc-tools: Update to 0.1.4.1
deromanize:
Check for NULL field to prevent crash in some situations
Take optional input file as second argument
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Tue, 13 Dec 2022
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[ 00:47 Jason W. Bacon (jwb) ] a069656
biology/biolibc-tools: Update to 0.1.4
Add deromanize subcommand to convert Roman numeral chromosome IDs
fastx-stats: Report standard deviation for read length
Changes: https://github.com/auerlab/biolibc-tools/releases
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Wed, 7 Sep 2022
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[ 21:10 Stefan Eßer (se) ] b7f0544 (Only the first 10 of 27931 ports in this commit are shown above.  )
Add WWW entries to port Makefiles
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.
Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.
There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above )
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Sat, 13 Aug 2022
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[ 18:51 Matthias Andree (mandree) ] 875d7c7 (Only the first 10 of 63 ports in this commit are shown above. )
*: bump PORTREVISION of all devel/xxhash users...
...except archivers/py-borgbackup, which requires a more complete fix.
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Wed, 20 Jul 2022
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[ 14:20 Tobias C. Berner (tcberner) ] 37526bb (Only the first 10 of 82 ports in this commit are shown above. )
biology: remove 'Created by' lines
A big Thank You to the original contributors of these ports:
* Aaron Dalton <aaron@FreeBSD.org>
* Akinori MUSHA aka knu <knu@idaemons.org>
* Andrey Zakhvatov
* Bob Zimmermann <rpz@cse.wustl.edu>
* Camson Huynh <chuynh@biolateral.com.au>
* Dan Siercks <dsiercks@uwm.edu>
* Fernan Aguero <fernan@iib.unsam.edu.ar>
* Hannes Hauswedell <h2+fbsdports@fsfe.org>
* J. Bacon <jwb@FreeBSD.org>
* Jason Bacon <jwb@FreeBSD.org>
* Jeremy <karlj000@unbc.ca> (Only the first 15 lines of the commit message are shown above )
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Sat, 11 Jun 2022
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[ 14:26 Jason W. Bacon (jwb) ] f869d6b
biology/biolibc-tools: Update to 0.1.3
Add vcf-downsample subcommand
Improvements to build system
extract-seq: Recurse to output subfeatures
Numerous other minor enhancements and fixes
Changes: https://github.com/auerlab/biolibc-tools/tags
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Tue, 15 Mar 2022
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[ 21:36 Jason W. Bacon (jwb) ] b8604e8
biology/biolibc-tools: Update to 0.1.2
New fastx-stats and ensembl2gene subcommands
Minor updates for biolibc 0.2.2 API changes
Minor bug fixes and ennancements
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Tue, 14 Dec 2021
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[ 19:45 Jason W. Bacon (jwb) ] 3a7f92e
biology/biolibc-tools: Update to 0.1.1
Make all programs subcommands of "blt"
Several new commands
Updates for evolving libxtend and biolibc APIs
Add --version flag
Numerous minor fixes and enhancements
Changes: https://github.com/auerlab/biolibc-tools/releases/tag/0.1.1
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Mon, 30 Aug 2021
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[ 13:09 Jason W. Bacon (jwb) ] 904aa60
biology/biolibc-tools: High-performance tools based on biolibc
Biolibc-tools is a collection of simple fast, memory-efficient,
programs for processing biological data. These are simple programs
built on biolibc that are not complex enough to warrant a separate
project.
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Number of commits found: 9 |
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