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Port details on branch 2022Q2
biococoa Bioinformatics framework
2.2.2_8 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 2.2.2_8Version of this port present on the latest quarterly branch.
There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2006-12-30 09:21:22
Last Update: 2023-04-25 15:17:15
Commit Hash: feb1fa3
Also Listed In: gnustep
License: LGPL21
WWW:
http://bioinformatics.org/biococoa/
Description:
The BioCocoa framework provides developers with the opportunity to add support for reading and writing BEAST, Clustal, EMBL, Fasta, GCG-MSF, GDE, Hennig86, NCBI, NEXUS, NONA, PDB, Phylip, PIR, Plain/Raw, Swiss-Prot and TNT files by writing only three lines of code. The framework is written in Cocoa (Objective-C). LICENSE: LGPL2 or later
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
Expand this list (71 items)
Collapse this list.
  1. /usr/local/share/licenses/biococoa-2.2.2_8/catalog.mk
  2. /usr/local/share/licenses/biococoa-2.2.2_8/LICENSE
  3. /usr/local/share/licenses/biococoa-2.2.2_8/LGPL21
  4. GNUstep/System/Library/Frameworks/BioCocoa.framework/BioCocoa
  5. GNUstep/System/Library/Frameworks/BioCocoa.framework/Headers
  6. GNUstep/System/Library/Frameworks/BioCocoa.framework/Resources
  7. GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/BioCocoa
  8. GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCAminoAcid.h
  9. GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCAnnotation.h
  10. GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCAtom.h
  11. GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCCachedFastaFile.h
  12. GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCCachedSequenceFile.h
  13. GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCChain.h
  14. GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCCodon.h
  15. GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCCodonDNA.h
  16. GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCCodonRNA.h
  17. GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCDataMatrix.h
  18. GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCFoundation.h
  19. GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCFoundationDefines.h
  20. GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCGeneticCode.h
  21. GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCMCP.h
  22. GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCNucleotide.h
  23. GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCNucleotideDNA.h
  24. GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCNucleotideRNA.h
  25. GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCPairwiseAlignment.h
  26. GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCParseSOFT.h
  27. GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCPlatform.h
  28. GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCPreferences.h
  29. GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCProteinStructure.h
  30. GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCResidue.h
  31. GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCSample.h
  32. GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCScoreMatrix.h
  33. GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCSecondaryStructure.h
  34. GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCSequence.h
  35. GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCSequenceAlignment.h
  36. GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCSequenceArray.h
  37. GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCSequenceCodon.h
  38. GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCSequenceReader.h
  39. GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCSequenceStructure.h
  40. GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCSequenceTool.h
  41. GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCSequenceWriter.h
  42. GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCSeries.h
  43. GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCStringDefinitions.h
  44. GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCSuffixArray.h
  45. GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCSymbol.h
  46. GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCSymbolSet.h
  47. GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCToolComplement.h
  48. GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCToolDigest.h
  49. GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCToolHydropathyCalculator.h
  50. GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCToolMassCalculator.h
  51. GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCToolSequenceFinder.h
  52. GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCToolSymbolCounter.h
  53. GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCToolTranslator.h
  54. GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCToolTranslatorDNA.h
  55. GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCUtilData.h
  56. GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCUtilStrings.h
  57. GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Resources/Info-gnustep.plist
  58. GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Resources/aminoacids.plist
  59. GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/Resources/nucleotides.plist
  60. GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/libBioCocoa.so
  61. GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/libBioCocoa.so.2
  62. GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/2/libBioCocoa.so.2.2.2
  63. GNUstep/System/Library/Frameworks/BioCocoa.framework/Versions/Current
  64. GNUstep/System/Library/Frameworks/BioCocoa.framework/libBioCocoa.so
  65. GNUstep/System/Library/Headers/BioCocoa
  66. GNUstep/System/Library/Libraries/libBioCocoa.so
  67. GNUstep/System/Library/Libraries/libBioCocoa.so.2
  68. GNUstep/System/Library/Libraries/libBioCocoa.so.2.2.2
  69. @owner
  70. @group
  71. @mode
Collapse this list.
Dependency lines:
  • biococoa>0:biology/biococoa
To install the port:
cd /usr/ports/biology/biococoa/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/biococoa
  • pkg install biococoa
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: biococoa
Flavors: there is no flavor information for this port.
distinfo:
SHA256 (biococoa-2.2.2-src.tgz) = 383eea4e04ca584ecf5bc06507996acf193d3b1df9afecaca6fb58cbe41df384 SIZE (biococoa-2.2.2-src.tgz) = 358850

Packages (timestamps in pop-ups are UTC):
biococoa
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest2.2.2_82.2.2_8--2.2.2_8---
FreeBSD:13:quarterly2.2.2_82.2.2_8--2.2.2_8-2.2.2_82.2.2_8
FreeBSD:14:latest2.2.2_82.2.2_8--2.2.2_8--2.2.2_8
FreeBSD:14:quarterly2.2.2_82.2.2_8--2.2.2_8-2.2.2_82.2.2_8
FreeBSD:15:latest2.2.2_82.2.2_8n/a-n/a-2.2.2_82.2.2_8
FreeBSD:15:quarterly--n/a-n/a---
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. gmake>=4.3 : devel/gmake
  2. gnustep-make>0 : devel/gnustep-make
  3. gnustep-back>0 : x11-toolkits/gnustep-back
Runtime dependencies:
  1. gnustep-back>0 : x11-toolkits/gnustep-back
Library dependencies:
  1. libobjc.so.4.6 : lang/libobjc2
This port is required by:
for Run
  1. x11/gnustep-app

Configuration Options:
No options to configure
Options name:
biology_biococoa
USES:
gnustep
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
Collapse this list.
  1. http://bioinformatics.org/biococoa/downloads/
Collapse this list.

There are no commits on branch 2022Q2 for this port