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non port: biology/bio-mocha/distinfo

Number of commits found: 5

Thursday, 5 Jan 2023
23:21 Jason W. Bacon (jwb) search for other commits by this committer
biology/bio-mocha: Update to 1.16

New release to sync with bcftools

Changes: https://github.com/freeseek/mocha/commits/master
commit hash: 09c70c7488989b1a37f4da6a447871c5bea06ee0 commit hash: 09c70c7488989b1a37f4da6a447871c5bea06ee0 commit hash: 09c70c7488989b1a37f4da6a447871c5bea06ee0 commit hash: 09c70c7488989b1a37f4da6a447871c5bea06ee0 09c70c7
Saturday, 26 Feb 2022
15:04 Jason W. Bacon (jwb) search for other commits by this committer
biology/bio-mocha: Update bcftools submodule to 1.15

Compatibility confirmed with upstream
commit hash: f46ddab3d69fb6cee784292be521a3aaf463aa97 commit hash: f46ddab3d69fb6cee784292be521a3aaf463aa97 commit hash: f46ddab3d69fb6cee784292be521a3aaf463aa97 commit hash: f46ddab3d69fb6cee784292be521a3aaf463aa97 f46ddab
Thursday, 13 Jan 2022
19:00 Jason W. Bacon (jwb) search for other commits by this committer
biology/bio-mocha: Update to 1.14-20220112

Upstream incorporated my patches to eliminate nested functions, which
are not standard C and pose security risks.
A few other minor updated.
commit hash: e33f72037a797431e5c4d89d1d222c5d5d92eb27 commit hash: e33f72037a797431e5c4d89d1d222c5d5d92eb27 commit hash: e33f72037a797431e5c4d89d1d222c5d5d92eb27 commit hash: e33f72037a797431e5c4d89d1d222c5d5d92eb27 e33f720
Tuesday, 21 Dec 2021
16:17 Jason W. Bacon (jwb) search for other commits by this committer
bio-mocha: Build plugin against bcftools 1.14, the current port
commit hash: 7a9f4b317a0a8eecc36ef8877412eb697b937a60 commit hash: 7a9f4b317a0a8eecc36ef8877412eb697b937a60 commit hash: 7a9f4b317a0a8eecc36ef8877412eb697b937a60 commit hash: 7a9f4b317a0a8eecc36ef8877412eb697b937a60 7a9f4b3
Friday, 3 Dec 2021
13:41 Jason W. Bacon (jwb) search for other commits by this committer
biology/bio-mocha: bcftools plugin for mosaic chromosomal alterations

MoChA is a bcftools plugin released under the MIT license for mosaic
chromosomal alteration detection and analysis from DNA microarray or
whole genome sequence data. It can be used both with Illumina and
Affymetrix data. It can also be used for detection of germline copy
number variants. Data can be prepared in usable file formats using the
gtc2vcf plugin.
commit hash: 9152cfc775fca98435610da5faad6d56c5cdeacb commit hash: 9152cfc775fca98435610da5faad6d56c5cdeacb commit hash: 9152cfc775fca98435610da5faad6d56c5cdeacb commit hash: 9152cfc775fca98435610da5faad6d56c5cdeacb 9152cfc

Number of commits found: 5