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Port details
bfc Correct sequencing errors from Illumina sequencing data
g20150417 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout g20150417Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2021-08-23 17:30:17
Last Update: 2022-09-07 21:58:51
Commit Hash: fb16dfe
License: MIT
WWW:
https://github.com/lh3/bfc
Description:
BFC is a standalone high-performance tool for correcting sequencing errors from Illumina sequencing data. It is specifically designed for high-coverage whole-genome human data, though also performs well for small genomes.
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb - no subversion history for this port

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
Expand this list (5 items)
Collapse this list.
  1. bin/bfc
  2. bin/hash2cnt
  3. /usr/local/share/licenses/bfc-g20150417/catalog.mk
  4. /usr/local/share/licenses/bfc-g20150417/LICENSE
  5. /usr/local/share/licenses/bfc-g20150417/MIT
Collapse this list.
Dependency lines:
  • bfc>0:biology/bfc
To install the port:
cd /usr/ports/biology/bfc/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/bfc
  • pkg install bfc
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: bfc
Flavors: there is no flavor information for this port.
distinfo:
TIMESTAMP = 1629673065 SHA256 (lh3-bfc-g20150417-69ab176e_GH0.tar.gz) = 202913e590421d23571c5e7c5cb9c23730ee57cb5b2eaa0e7806d33c49482452 SIZE (lh3-bfc-g20150417-69ab176e_GH0.tar.gz) = 68138

Packages (timestamps in pop-ups are UTC):
bfc
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latestg20150417g20150417-g20150417g20150417---
FreeBSD:13:quarterlyg20150417g20150417g20150417g20150417g20150417g20150417g20150417g20150417
FreeBSD:14:latestg20150417g20150417g20150417g20150417g20150417g20150417-g20150417
FreeBSD:14:quarterlyg20150417g20150417-g20150417g20150417g20150417g20150417g20150417
FreeBSD:15:latestg20150417g20150417n/ag20150417n/ag20150417g20150417g20150417
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. gmake>=4.3 : devel/gmake
This port is required by:
for Run
  1. biology/biostar-tools

Configuration Options:
No options to configure
Options name:
biology_bfc
USES:
gmake
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
Collapse this list.
  1. https://codeload.github.com/lh3/bfc/tar.gz/69ab176e?dummy=/
Collapse this list.

Number of commits found: 3

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
07 Sep 2022 21:58:51
commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)
g20150417
07 Sep 2022 21:10:59
commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
g20150417
23 Aug 2021 17:28:41
commit hash: 2e559ca48c93b075905245367e11e30b9be34b2ccommit hash: 2e559ca48c93b075905245367e11e30b9be34b2ccommit hash: 2e559ca48c93b075905245367e11e30b9be34b2ccommit hash: 2e559ca48c93b075905245367e11e30b9be34b2c files touched by this commit
Jason W. Bacon (jwb) search for other commits by this committer
biology/bfc: Correct sequencing errors from Illumina sequencing data

BFC is a standalone high-performance tool for correcting sequencing
errors from Illumina sequencing data. It is specifically designed for
high-coverage whole-genome human data, though also performs well for
small genomes.

Number of commits found: 3