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Port details
augustus Genome annotation tool
3.5.0_8 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 3.5.0_5Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2022-11-25 23:57:41
Last Update: 2024-01-28 12:02:23
Commit Hash: 68a7254
Also Listed In: science
License: GPLv3
WWW:
http://bioinf.uni-greifswald.de/webaugustus/
Description:
AUGUSTUS is a program that predicts genes in eukaryotic genomic sequences. AUGUSTUS usually belongs to the most accurate programs for the species it is trained for. Often it is the most accurate ab initio program. For example, at the independent gene finder assessment (EGASP) on the human ENCODE regions AUGUSTUS was the most accurate gene finder among the tested ab initio programs. At the more recent nGASP (worm), it was among the best in the ab initio and transcript-based categories. See accuracy statistics for further details.
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb - no subversion history for this port

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
Expand this list (1529 items)
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  1. /usr/local/share/licenses/augustus-gene-prediction-3.5.0_8/catalog.mk
  2. /usr/local/share/licenses/augustus-gene-prediction-3.5.0_8/LICENSE
  3. /usr/local/share/licenses/augustus-gene-prediction-3.5.0_8/GPLv3
  4. augustus/bin/aln2wig
  5. augustus/bin/augustus
  6. augustus/bin/bam2hints
  7. augustus/bin/bam2wig
  8. augustus/bin/compileSpliceCands
  9. augustus/bin/etraining
  10. augustus/bin/fastBlockSearch
  11. augustus/bin/filterBam
  12. augustus/bin/getSeq
  13. augustus/bin/homGeneMapping
  14. augustus/bin/joingenes
  15. augustus/bin/load2db
  16. augustus/bin/load2sqlitedb
  17. augustus/bin/pp_simScore
  18. augustus/bin/prepareAlign
  19. augustus/config/cgp/cgp_param_21features_accuracy_largerGrid.convDivCorrect.cfg
  20. augustus/config/cgp/log_reg_parameters_arabidopsis.cfg
  21. augustus/config/cgp/log_reg_parameters_default.cfg
  22. augustus/config/cgp/log_reg_parameters_fly.cfg
  23. augustus/config/cgp/log_reg_parameters_human.cfg
  24. augustus/config/cgp/log_reg_parameters_primates.cfg
  25. augustus/config/cgp/log_reg_parameters_s_aureus.cfg
  26. augustus/config/extrinsic/extrinsic-cgp.cfg
  27. augustus/config/extrinsic/extrinsic.E.XNT.cfg
  28. augustus/config/extrinsic/extrinsic.E.cfg
  29. augustus/config/extrinsic/extrinsic.M.RM.E.W.P.cfg
  30. augustus/config/extrinsic/extrinsic.M.RM.E.W.cfg
  31. augustus/config/extrinsic/extrinsic.M.RM.PB.cfg
  32. augustus/config/extrinsic/extrinsic.ME.cfg
  33. augustus/config/extrinsic/extrinsic.MEMS.cfg
  34. augustus/config/extrinsic/extrinsic.MP.cfg
  35. augustus/config/extrinsic/extrinsic.MPE.cfg
  36. augustus/config/extrinsic/extrinsic.MT.cfg
  37. augustus/config/extrinsic/extrinsic.cfg
  38. augustus/config/model/constraints_shadow_partial.txt
  39. augustus/config/model/constraints_shadow_partial_utr.txt
  40. augustus/config/model/ovlp_len.pbl
  41. augustus/config/model/ovlp_len_archaea.pbl
  42. augustus/config/model/states_shadow.cfg
  43. augustus/config/model/states_shadow_2igenic.cfg
  44. augustus/config/model/states_shadow_bacterium.cfg
  45. augustus/config/model/states_shadow_intronless.cfg
  46. augustus/config/model/states_shadow_utr.cfg
  47. augustus/config/model/states_shadow_utr_nc.cfg
  48. augustus/config/model/states_singlestrand.cfg
  49. augustus/config/model/states_singlestrand_2igenic.cfg
  50. augustus/config/model/trans_shadow_atleastone.pbl
  51. augustus/config/model/trans_shadow_bacterium.pbl
  52. augustus/config/model/trans_shadow_complete.pbl
  53. augustus/config/model/trans_shadow_complete_utr.pbl
  54. augustus/config/model/trans_shadow_exactlyone.pbl
  55. augustus/config/model/trans_shadow_intronless.pbl
  56. augustus/config/model/trans_shadow_partial.pbl
  57. augustus/config/model/trans_shadow_partial_utr.pbl
  58. augustus/config/model/trans_shadow_partial_utr_nc.pbl
  59. augustus/config/model/trans_singlestrand_atleastone.pbl
  60. augustus/config/model/trans_singlestrand_complete.pbl
  61. augustus/config/model/trans_singlestrand_exactlyone.pbl
  62. augustus/config/model/trans_singlestrand_partial.pbl
  63. augustus/config/parameters/AUG_CMDLN_PARAMETERS.md
  64. augustus/config/parameters/aug_cmdln_parameters.json
  65. augustus/config/profile/blosum55.qij
  66. augustus/config/profile/blosum62.qij
  67. augustus/config/profile/default.qij
  68. augustus/config/species/Anopheles_gambiae/Anopheles_gambiae_exon_probs.pbl
  69. augustus/config/species/Anopheles_gambiae/Anopheles_gambiae_igenic_probs.pbl
  70. augustus/config/species/Anopheles_gambiae/Anopheles_gambiae_intron_probs.pbl
  71. augustus/config/species/Anopheles_gambiae/Anopheles_gambiae_metapars.cfg
  72. augustus/config/species/Anopheles_gambiae/Anopheles_gambiae_metapars.cgp.cfg
  73. augustus/config/species/Anopheles_gambiae/Anopheles_gambiae_metapars.utr.cfg
  74. augustus/config/species/Anopheles_gambiae/Anopheles_gambiae_parameters.cfg
  75. augustus/config/species/Anopheles_gambiae/Anopheles_gambiae_weightmatrix.txt
  76. augustus/config/species/Anopheles_gambiae/README.txt
  77. augustus/config/species/Argopecten_irradians/Argopecten_irradians_exon_probs.pbl
  78. augustus/config/species/Argopecten_irradians/Argopecten_irradians_igenic_probs.pbl
  79. augustus/config/species/Argopecten_irradians/Argopecten_irradians_intron_probs.pbl
  80. augustus/config/species/Argopecten_irradians/Argopecten_irradians_metapars.cfg
  81. augustus/config/species/Argopecten_irradians/Argopecten_irradians_metapars.cgp.cfg
  82. augustus/config/species/Argopecten_irradians/Argopecten_irradians_metapars.utr.cfg
  83. augustus/config/species/Argopecten_irradians/Argopecten_irradians_parameters.cfg
  84. augustus/config/species/Argopecten_irradians/Argopecten_irradians_weightmatrix.txt
  85. augustus/config/species/Argopecten_irradians/README.txt
  86. augustus/config/species/Aurelia_aurita/Aurelia_aurita_exon_probs.pbl
  87. augustus/config/species/Aurelia_aurita/Aurelia_aurita_igenic_probs.pbl
  88. augustus/config/species/Aurelia_aurita/Aurelia_aurita_intron_probs.pbl
  89. augustus/config/species/Aurelia_aurita/Aurelia_aurita_metapars.cfg
  90. augustus/config/species/Aurelia_aurita/Aurelia_aurita_metapars.cgp.cfg
  91. augustus/config/species/Aurelia_aurita/Aurelia_aurita_metapars.utr.cfg
  92. augustus/config/species/Aurelia_aurita/Aurelia_aurita_parameters.cfg
  93. augustus/config/species/Aurelia_aurita/Aurelia_aurita_weightmatrix.txt
  94. augustus/config/species/Aurelia_aurita/README.txt
  95. augustus/config/species/Bathycoccus_prasinos/Bathycoccus_prasinos_exon_probs.pbl
  96. augustus/config/species/Bathycoccus_prasinos/Bathycoccus_prasinos_igenic_probs.pbl
  97. augustus/config/species/Bathycoccus_prasinos/Bathycoccus_prasinos_intron_probs.pbl
  98. augustus/config/species/Bathycoccus_prasinos/Bathycoccus_prasinos_metapars.cfg
  99. augustus/config/species/Bathycoccus_prasinos/Bathycoccus_prasinos_metapars.cgp.cfg
  100. augustus/config/species/Bathycoccus_prasinos/Bathycoccus_prasinos_metapars.utr.cfg
  101. augustus/config/species/Bathycoccus_prasinos/Bathycoccus_prasinos_parameters.cfg
  102. augustus/config/species/Bathycoccus_prasinos/Bathycoccus_prasinos_weightmatrix.txt
  103. augustus/config/species/Bathycoccus_prasinos/README.txt
  104. augustus/config/species/Berviolum_minutum/Berviolum_minutum_exon_probs.pbl
  105. augustus/config/species/Berviolum_minutum/Berviolum_minutum_igenic_probs.pbl
  106. augustus/config/species/Berviolum_minutum/Berviolum_minutum_intron_probs.pbl
  107. augustus/config/species/Berviolum_minutum/Berviolum_minutum_metapars.cfg
  108. augustus/config/species/Berviolum_minutum/Berviolum_minutum_metapars.cgp.cfg
  109. augustus/config/species/Berviolum_minutum/Berviolum_minutum_metapars.utr.cfg
  110. augustus/config/species/Berviolum_minutum/Berviolum_minutum_parameters.cfg
  111. augustus/config/species/Berviolum_minutum/Berviolum_minutum_weightmatrix.txt
  112. augustus/config/species/Berviolum_minutum/README.txt
  113. augustus/config/species/Branchiostoma_floridae/Branchiostoma_floridae_exon_probs.pbl
  114. augustus/config/species/Branchiostoma_floridae/Branchiostoma_floridae_igenic_probs.pbl
  115. augustus/config/species/Branchiostoma_floridae/Branchiostoma_floridae_intron_probs.pbl
  116. augustus/config/species/Branchiostoma_floridae/Branchiostoma_floridae_metapars.cfg
  117. augustus/config/species/Branchiostoma_floridae/Branchiostoma_floridae_metapars.cgp.cfg
  118. augustus/config/species/Branchiostoma_floridae/Branchiostoma_floridae_metapars.utr.cfg
  119. augustus/config/species/Branchiostoma_floridae/Branchiostoma_floridae_parameters.cfg
  120. augustus/config/species/Branchiostoma_floridae/Branchiostoma_floridae_weightmatrix.txt
  121. augustus/config/species/Branchiostoma_floridae/README.txt
  122. augustus/config/species/Cassiopea_xamachana/Cassiopea_xamachana_exon_probs.pbl
  123. augustus/config/species/Cassiopea_xamachana/Cassiopea_xamachana_igenic_probs.pbl
  124. augustus/config/species/Cassiopea_xamachana/Cassiopea_xamachana_intron_probs.pbl
  125. augustus/config/species/Cassiopea_xamachana/Cassiopea_xamachana_metapars.cfg
  126. augustus/config/species/Cassiopea_xamachana/Cassiopea_xamachana_metapars.cgp.cfg
  127. augustus/config/species/Cassiopea_xamachana/Cassiopea_xamachana_metapars.utr.cfg
  128. augustus/config/species/Cassiopea_xamachana/Cassiopea_xamachana_parameters.cfg
  129. augustus/config/species/Cassiopea_xamachana/Cassiopea_xamachana_weightmatrix.txt
  130. augustus/config/species/Chlamydomonas_eustigma/Chlamydomonas_eustigma_exon_probs.pbl
  131. augustus/config/species/Chlamydomonas_eustigma/Chlamydomonas_eustigma_igenic_probs.pbl
  132. augustus/config/species/Chlamydomonas_eustigma/Chlamydomonas_eustigma_intron_probs.pbl
  133. augustus/config/species/Chlamydomonas_eustigma/Chlamydomonas_eustigma_metapars.cfg
  134. augustus/config/species/Chlamydomonas_eustigma/Chlamydomonas_eustigma_metapars.cgp.cfg
  135. augustus/config/species/Chlamydomonas_eustigma/Chlamydomonas_eustigma_metapars.utr.cfg
  136. augustus/config/species/Chlamydomonas_eustigma/Chlamydomonas_eustigma_parameters.cfg
  137. augustus/config/species/Chlamydomonas_eustigma/Chlamydomonas_eustigma_weightmatrix.txt
  138. augustus/config/species/Chlamydomonas_eustigma/README.txt
  139. augustus/config/species/Chloropicon_primus/Chloropicon_primus_exon_probs.pbl
  140. augustus/config/species/Chloropicon_primus/Chloropicon_primus_igenic_probs.pbl
  141. augustus/config/species/Chloropicon_primus/Chloropicon_primus_intron_probs.pbl
  142. augustus/config/species/Chloropicon_primus/Chloropicon_primus_metapars.cfg
  143. augustus/config/species/Chloropicon_primus/Chloropicon_primus_metapars.cgp.cfg
  144. augustus/config/species/Chloropicon_primus/Chloropicon_primus_metapars.utr.cfg
  145. augustus/config/species/Chloropicon_primus/Chloropicon_primus_parameters.cfg
  146. augustus/config/species/Chloropicon_primus/Chloropicon_primus_weightmatrix.txt
  147. augustus/config/species/Chloropicon_primus/README.txt
  148. augustus/config/species/Chrysaora_chesapeakei/Chrysaora_chesapeakei_exon_probs.pbl
  149. augustus/config/species/Chrysaora_chesapeakei/Chrysaora_chesapeakei_igenic_probs.pbl
  150. augustus/config/species/Chrysaora_chesapeakei/Chrysaora_chesapeakei_intron_probs.pbl
  151. augustus/config/species/Chrysaora_chesapeakei/Chrysaora_chesapeakei_metapars.cfg
  152. augustus/config/species/Chrysaora_chesapeakei/Chrysaora_chesapeakei_metapars.cgp.cfg
  153. augustus/config/species/Chrysaora_chesapeakei/Chrysaora_chesapeakei_metapars.utr.cfg
  154. augustus/config/species/Chrysaora_chesapeakei/Chrysaora_chesapeakei_parameters.cfg
  155. augustus/config/species/Chrysaora_chesapeakei/Chrysaora_chesapeakei_weightmatrix.txt
  156. augustus/config/species/Chrysaora_chesapeakei/README.txt
  157. augustus/config/species/Conidiobolus_coronatus/Conidiobolus_coronatus_exon_probs.pbl
  158. augustus/config/species/Conidiobolus_coronatus/Conidiobolus_coronatus_igenic_probs.pbl
  159. augustus/config/species/Conidiobolus_coronatus/Conidiobolus_coronatus_intron_probs.pbl
  160. augustus/config/species/Conidiobolus_coronatus/Conidiobolus_coronatus_metapars.cfg
  161. augustus/config/species/Conidiobolus_coronatus/Conidiobolus_coronatus_metapars.utr.cfg
  162. augustus/config/species/Conidiobolus_coronatus/Conidiobolus_coronatus_parameters.cfg
  163. augustus/config/species/Conidiobolus_coronatus/Conidiobolus_coronatus_utr_probs.pbl
  164. augustus/config/species/Conidiobolus_coronatus/Conidiobolus_coronatus_weightmatrix.txt
  165. augustus/config/species/Cryptosporidium_hominis/Cryptosporidium_hominis_exon_probs.pbl
  166. augustus/config/species/Cryptosporidium_hominis/Cryptosporidium_hominis_igenic_probs.pbl
  167. augustus/config/species/Cryptosporidium_hominis/Cryptosporidium_hominis_intron_probs.pbl
  168. augustus/config/species/Cryptosporidium_hominis/Cryptosporidium_hominis_metapars.cfg
  169. augustus/config/species/Cryptosporidium_hominis/Cryptosporidium_hominis_metapars.cgp.cfg
  170. augustus/config/species/Cryptosporidium_hominis/Cryptosporidium_hominis_metapars.utr.cfg
  171. augustus/config/species/Cryptosporidium_hominis/Cryptosporidium_hominis_parameters.cfg
  172. augustus/config/species/Cryptosporidium_hominis/Cryptosporidium_hominis_weightmatrix.txt
  173. augustus/config/species/Cryptosporidium_hominis/README.txt
  174. augustus/config/species/Cyclotella_cryptica/Cyclotella_cryptica_exon_probs.pbl
  175. augustus/config/species/Cyclotella_cryptica/Cyclotella_cryptica_igenic_probs.pbl
  176. augustus/config/species/Cyclotella_cryptica/Cyclotella_cryptica_intron_probs.pbl
  177. augustus/config/species/Cyclotella_cryptica/Cyclotella_cryptica_metapars.cfg
  178. augustus/config/species/Cyclotella_cryptica/Cyclotella_cryptica_metapars.cgp.cfg
  179. augustus/config/species/Cyclotella_cryptica/Cyclotella_cryptica_metapars.utr.cfg
  180. augustus/config/species/Cyclotella_cryptica/Cyclotella_cryptica_parameters.cfg
  181. augustus/config/species/Cyclotella_cryptica/Cyclotella_cryptica_weightmatrix.txt
  182. augustus/config/species/Cyclotella_cryptica/README.txt
  183. augustus/config/species/Dermasterias_imbricata/Dermasterias_imbricata_exon_probs.pbl
  184. augustus/config/species/Dermasterias_imbricata/Dermasterias_imbricata_igenic_probs.pbl
  185. augustus/config/species/Dermasterias_imbricata/Dermasterias_imbricata_intron_probs.pbl
  186. augustus/config/species/Dermasterias_imbricata/Dermasterias_imbricata_metapars.cfg
  187. augustus/config/species/Dermasterias_imbricata/Dermasterias_imbricata_metapars.cgp.cfg
  188. augustus/config/species/Dermasterias_imbricata/Dermasterias_imbricata_metapars.utr.cfg
  189. augustus/config/species/Dermasterias_imbricata/Dermasterias_imbricata_parameters.cfg
  190. augustus/config/species/Dermasterias_imbricata/Dermasterias_imbricata_weightmatrix.txt
  191. augustus/config/species/Dermasterias_imbricata/README.txt
  192. augustus/config/species/Dunaliella_salina/Dunaliella_salina_exon_probs.pbl
  193. augustus/config/species/Dunaliella_salina/Dunaliella_salina_igenic_probs.pbl
  194. augustus/config/species/Dunaliella_salina/Dunaliella_salina_intron_probs.pbl
  195. augustus/config/species/Dunaliella_salina/Dunaliella_salina_metapars.cfg
  196. augustus/config/species/Dunaliella_salina/Dunaliella_salina_metapars.cgp.cfg
  197. augustus/config/species/Dunaliella_salina/Dunaliella_salina_metapars.utr.cfg
  198. augustus/config/species/Dunaliella_salina/Dunaliella_salina_parameters.cfg
  199. augustus/config/species/Dunaliella_salina/Dunaliella_salina_weightmatrix.txt
  200. augustus/config/species/Dunaliella_salina/README.txt
  201. augustus/config/species/E_coli_K12/E_coli_K12_exon_probs.pbl
  202. augustus/config/species/E_coli_K12/E_coli_K12_igenic_probs.pbl
  203. augustus/config/species/E_coli_K12/E_coli_K12_metapars.cfg
  204. augustus/config/species/E_coli_K12/E_coli_K12_metapars.utr.cfg
  205. augustus/config/species/E_coli_K12/E_coli_K12_ovlp_len.pbl
  206. augustus/config/species/E_coli_K12/E_coli_K12_parameters.cfg
  207. augustus/config/species/E_coli_K12/E_coli_K12_trans_shadow_bacterium.pbl
  208. augustus/config/species/E_coli_K12/E_coli_K12_weightmatrix.txt
  209. augustus/config/species/Ectocarpus_siliculosus/Ectocarpus_siliculosus_exon_probs.pbl
  210. augustus/config/species/Ectocarpus_siliculosus/Ectocarpus_siliculosus_igenic_probs.pbl
  211. augustus/config/species/Ectocarpus_siliculosus/Ectocarpus_siliculosus_intron_probs.pbl
  212. augustus/config/species/Ectocarpus_siliculosus/Ectocarpus_siliculosus_metapars.cfg
  213. augustus/config/species/Ectocarpus_siliculosus/Ectocarpus_siliculosus_metapars.cgp.cfg
  214. augustus/config/species/Ectocarpus_siliculosus/Ectocarpus_siliculosus_metapars.utr.cfg
  215. augustus/config/species/Ectocarpus_siliculosus/Ectocarpus_siliculosus_parameters.cfg
  216. augustus/config/species/Ectocarpus_siliculosus/Ectocarpus_siliculosus_weightmatrix.txt
  217. augustus/config/species/Ectocarpus_siliculosus/README.txt
  218. augustus/config/species/Encephalitozoon_cuniculi/Encephalitozoon_cuniculi_exon_probs.pbl
  219. augustus/config/species/Encephalitozoon_cuniculi/Encephalitozoon_cuniculi_igenic_probs.pbl
  220. augustus/config/species/Encephalitozoon_cuniculi/Encephalitozoon_cuniculi_intron_probs.pbl
  221. augustus/config/species/Encephalitozoon_cuniculi/Encephalitozoon_cuniculi_metapars.cfg
  222. augustus/config/species/Encephalitozoon_cuniculi/Encephalitozoon_cuniculi_metapars.cgp.cfg
  223. augustus/config/species/Encephalitozoon_cuniculi/Encephalitozoon_cuniculi_metapars.utr.cfg
  224. augustus/config/species/Encephalitozoon_cuniculi/Encephalitozoon_cuniculi_parameters.cfg
  225. augustus/config/species/Encephalitozoon_cuniculi/Encephalitozoon_cuniculi_weightmatrix.txt
  226. augustus/config/species/Encephalitozoon_cuniculi/README.txt
  227. augustus/config/species/Fistulifera_solaris/Fistulifera_solaris_exon_probs.pbl
  228. augustus/config/species/Fistulifera_solaris/Fistulifera_solaris_igenic_probs.pbl
  229. augustus/config/species/Fistulifera_solaris/Fistulifera_solaris_intron_probs.pbl
  230. augustus/config/species/Fistulifera_solaris/Fistulifera_solaris_metapars.cfg
  231. augustus/config/species/Fistulifera_solaris/Fistulifera_solaris_metapars.cgp.cfg
  232. augustus/config/species/Fistulifera_solaris/Fistulifera_solaris_metapars.utr.cfg
  233. augustus/config/species/Fistulifera_solaris/Fistulifera_solaris_parameters.cfg
  234. augustus/config/species/Fistulifera_solaris/Fistulifera_solaris_weightmatrix.txt
  235. augustus/config/species/Fistulifera_solaris/README.txt
  236. augustus/config/species/Fragilariopsis_cylindrus_CCMP1102/Fragilariopsis_cylindrus_CCMP1102_exon_probs.pbl
  237. augustus/config/species/Fragilariopsis_cylindrus_CCMP1102/Fragilariopsis_cylindrus_CCMP1102_igenic_probs.pbl
  238. augustus/config/species/Fragilariopsis_cylindrus_CCMP1102/Fragilariopsis_cylindrus_CCMP1102_intron_probs.pbl
  239. augustus/config/species/Fragilariopsis_cylindrus_CCMP1102/Fragilariopsis_cylindrus_CCMP1102_metapars.cfg
  240. augustus/config/species/Fragilariopsis_cylindrus_CCMP1102/Fragilariopsis_cylindrus_CCMP1102_metapars.cgp.cfg
  241. augustus/config/species/Fragilariopsis_cylindrus_CCMP1102/Fragilariopsis_cylindrus_CCMP1102_metapars.utr.cfg
  242. augustus/config/species/Fragilariopsis_cylindrus_CCMP1102/Fragilariopsis_cylindrus_CCMP1102_parameters.cfg
  243. augustus/config/species/Fragilariopsis_cylindrus_CCMP1102/Fragilariopsis_cylindrus_CCMP1102_weightmatrix.txt
  244. augustus/config/species/Fragilariopsis_cylindrus_CCMP1102/README.txt
  245. augustus/config/species/Gonapodya_prolifera/Gonapodya_prolifera_exon_probs.pbl
  246. augustus/config/species/Gonapodya_prolifera/Gonapodya_prolifera_igenic_probs.pbl
  247. augustus/config/species/Gonapodya_prolifera/Gonapodya_prolifera_intron_probs.pbl
  248. augustus/config/species/Gonapodya_prolifera/Gonapodya_prolifera_metapars.cfg
  249. augustus/config/species/Gonapodya_prolifera/Gonapodya_prolifera_metapars.cgp.cfg
  250. augustus/config/species/Gonapodya_prolifera/Gonapodya_prolifera_metapars.utr.cfg
  251. augustus/config/species/Gonapodya_prolifera/Gonapodya_prolifera_parameters.cfg
  252. augustus/config/species/Gonapodya_prolifera/Gonapodya_prolifera_weightmatrix.txt
  253. augustus/config/species/Gonapodya_prolifera/README.txt
  254. augustus/config/species/Hydra_vulgaris/Hydra_vulgaris_exon_probs.pbl
  255. augustus/config/species/Hydra_vulgaris/Hydra_vulgaris_igenic_probs.pbl
  256. augustus/config/species/Hydra_vulgaris/Hydra_vulgaris_intron_probs.pbl
  257. augustus/config/species/Hydra_vulgaris/Hydra_vulgaris_metapars.cfg
  258. augustus/config/species/Hydra_vulgaris/Hydra_vulgaris_metapars.cgp.cfg
  259. augustus/config/species/Hydra_vulgaris/Hydra_vulgaris_metapars.utr.cfg
  260. augustus/config/species/Hydra_vulgaris/Hydra_vulgaris_parameters.cfg
  261. augustus/config/species/Hydra_vulgaris/Hydra_vulgaris_weightmatrix.txt
  262. augustus/config/species/Hydra_vulgaris/README.txt
  263. augustus/config/species/Leptasterias_sp/Leptasterias_sp_exon_probs.pbl
  264. augustus/config/species/Leptasterias_sp/Leptasterias_sp_igenic_probs.pbl
  265. augustus/config/species/Leptasterias_sp/Leptasterias_sp_intron_probs.pbl
  266. augustus/config/species/Leptasterias_sp/Leptasterias_sp_metapars.cfg
  267. augustus/config/species/Leptasterias_sp/Leptasterias_sp_metapars.cgp.cfg
  268. augustus/config/species/Leptasterias_sp/Leptasterias_sp_metapars.utr.cfg
  269. augustus/config/species/Leptasterias_sp/Leptasterias_sp_parameters.cfg
  270. augustus/config/species/Leptasterias_sp/Leptasterias_sp_weightmatrix.txt
  271. augustus/config/species/Leptasterias_sp/README.txt
  272. augustus/config/species/Loa_loa/Loa_loa_exon_probs.pbl
  273. augustus/config/species/Loa_loa/Loa_loa_igenic_probs.pbl
  274. augustus/config/species/Loa_loa/Loa_loa_intron_probs.pbl
  275. augustus/config/species/Loa_loa/Loa_loa_metapars.cfg
  276. augustus/config/species/Loa_loa/Loa_loa_metapars.cgp.cfg
  277. augustus/config/species/Loa_loa/Loa_loa_metapars.utr.cfg
  278. augustus/config/species/Loa_loa/Loa_loa_parameters.cfg
  279. augustus/config/species/Loa_loa/Loa_loa_weightmatrix.txt
  280. augustus/config/species/Loa_loa/README.txt
  281. augustus/config/species/Micromonas_commoda/Micromonas_commoda_exon_probs.pbl
  282. augustus/config/species/Micromonas_commoda/Micromonas_commoda_igenic_probs.pbl
  283. augustus/config/species/Micromonas_commoda/Micromonas_commoda_intron_probs.pbl
  284. augustus/config/species/Micromonas_commoda/Micromonas_commoda_metapars.cfg
  285. augustus/config/species/Micromonas_commoda/Micromonas_commoda_metapars.cgp.cfg
  286. augustus/config/species/Micromonas_commoda/Micromonas_commoda_metapars.utr.cfg
  287. augustus/config/species/Micromonas_commoda/Micromonas_commoda_parameters.cfg
  288. augustus/config/species/Micromonas_commoda/Micromonas_commoda_weightmatrix.txt
  289. augustus/config/species/Micromonas_commoda/README.txt
  290. augustus/config/species/Micromonas_pusilla/Micromonas_pusilla_exon_probs.pbl
  291. augustus/config/species/Micromonas_pusilla/Micromonas_pusilla_igenic_probs.pbl
  292. augustus/config/species/Micromonas_pusilla/Micromonas_pusilla_intron_probs.pbl
  293. augustus/config/species/Micromonas_pusilla/Micromonas_pusilla_metapars.cfg
  294. augustus/config/species/Micromonas_pusilla/Micromonas_pusilla_metapars.cgp.cfg
  295. augustus/config/species/Micromonas_pusilla/Micromonas_pusilla_metapars.utr.cfg
  296. augustus/config/species/Micromonas_pusilla/Micromonas_pusilla_parameters.cfg
  297. augustus/config/species/Micromonas_pusilla/Micromonas_pusilla_weightmatrix.txt
  298. augustus/config/species/Micromonas_pusilla/README.txt
  299. augustus/config/species/Monoraphidium_neglectum/Monoraphidium_neglectum_exon_probs.pbl
  300. augustus/config/species/Monoraphidium_neglectum/Monoraphidium_neglectum_igenic_probs.pbl
  301. augustus/config/species/Monoraphidium_neglectum/Monoraphidium_neglectum_intron_probs.pbl
  302. augustus/config/species/Monoraphidium_neglectum/Monoraphidium_neglectum_metapars.cfg
  303. augustus/config/species/Monoraphidium_neglectum/Monoraphidium_neglectum_metapars.cgp.cfg
  304. augustus/config/species/Monoraphidium_neglectum/Monoraphidium_neglectum_metapars.utr.cfg
  305. augustus/config/species/Monoraphidium_neglectum/Monoraphidium_neglectum_parameters.cfg
  306. augustus/config/species/Monoraphidium_neglectum/Monoraphidium_neglectum_weightmatrix.txt
  307. augustus/config/species/Monoraphidium_neglectum/README.txt
  308. augustus/config/species/Monosiga_brevicollis/Monosiga_brevicollis_exon_probs.pbl
  309. augustus/config/species/Monosiga_brevicollis/Monosiga_brevicollis_igenic_probs.pbl
  310. augustus/config/species/Monosiga_brevicollis/Monosiga_brevicollis_intron_probs.pbl
  311. augustus/config/species/Monosiga_brevicollis/Monosiga_brevicollis_metapars.cfg
  312. augustus/config/species/Monosiga_brevicollis/Monosiga_brevicollis_metapars.cgp.cfg
  313. augustus/config/species/Monosiga_brevicollis/Monosiga_brevicollis_metapars.utr.cfg
  314. augustus/config/species/Monosiga_brevicollis/Monosiga_brevicollis_parameters.cfg
  315. augustus/config/species/Monosiga_brevicollis/Monosiga_brevicollis_weightmatrix.txt
  316. augustus/config/species/Monosiga_brevicollis/README.txt
  317. augustus/config/species/Naegleria_gruberi/Naegleria_gruberi_exon_probs.pbl
  318. augustus/config/species/Naegleria_gruberi/Naegleria_gruberi_igenic_probs.pbl
  319. augustus/config/species/Naegleria_gruberi/Naegleria_gruberi_intron_probs.pbl
  320. augustus/config/species/Naegleria_gruberi/Naegleria_gruberi_metapars.cfg
  321. augustus/config/species/Naegleria_gruberi/Naegleria_gruberi_metapars.cgp.cfg
  322. augustus/config/species/Naegleria_gruberi/Naegleria_gruberi_metapars.utr.cfg
  323. augustus/config/species/Naegleria_gruberi/Naegleria_gruberi_parameters.cfg
  324. augustus/config/species/Naegleria_gruberi/Naegleria_gruberi_weightmatrix.txt
  325. augustus/config/species/Naegleria_gruberi/README.txt
  326. augustus/config/species/Nemopilema_nomurai/Nemopilema_nomurai_exon_probs.pbl
  327. augustus/config/species/Nemopilema_nomurai/Nemopilema_nomurai_igenic_probs.pbl
  328. augustus/config/species/Nemopilema_nomurai/Nemopilema_nomurai_intron_probs.pbl
  329. augustus/config/species/Nemopilema_nomurai/Nemopilema_nomurai_metapars.cfg
  330. augustus/config/species/Nemopilema_nomurai/Nemopilema_nomurai_metapars.cgp.cfg
  331. augustus/config/species/Nemopilema_nomurai/Nemopilema_nomurai_metapars.utr.cfg
  332. augustus/config/species/Nemopilema_nomurai/Nemopilema_nomurai_parameters.cfg
  333. augustus/config/species/Nemopilema_nomurai/Nemopilema_nomurai_weightmatrix.txt
  334. augustus/config/species/Nemopilema_nomurai/README.txt
  335. augustus/config/species/Notospermus_geniculatus/Notospermus_geniculatus_exon_probs.pbl
  336. augustus/config/species/Notospermus_geniculatus/Notospermus_geniculatus_igenic_probs.pbl
  337. augustus/config/species/Notospermus_geniculatus/Notospermus_geniculatus_intron_probs.pbl
  338. augustus/config/species/Notospermus_geniculatus/Notospermus_geniculatus_metapars.cfg
  339. augustus/config/species/Notospermus_geniculatus/Notospermus_geniculatus_metapars.cgp.cfg
  340. augustus/config/species/Notospermus_geniculatus/Notospermus_geniculatus_metapars.utr.cfg
  341. augustus/config/species/Notospermus_geniculatus/Notospermus_geniculatus_parameters.cfg
  342. augustus/config/species/Notospermus_geniculatus/Notospermus_geniculatus_weightmatrix.txt
  343. augustus/config/species/Notospermus_geniculatus/README.txt
  344. augustus/config/species/Ostreococcus_sp_lucimarinus/Ostreococcus_sp_lucimarinus_exon_probs.pbl
  345. augustus/config/species/Ostreococcus_sp_lucimarinus/Ostreococcus_sp_lucimarinus_igenic_probs.pbl
  346. augustus/config/species/Ostreococcus_sp_lucimarinus/Ostreococcus_sp_lucimarinus_intron_probs.pbl
  347. augustus/config/species/Ostreococcus_sp_lucimarinus/Ostreococcus_sp_lucimarinus_metapars.cfg
  348. augustus/config/species/Ostreococcus_sp_lucimarinus/Ostreococcus_sp_lucimarinus_metapars.cgp.cfg
  349. augustus/config/species/Ostreococcus_sp_lucimarinus/Ostreococcus_sp_lucimarinus_metapars.utr.cfg
  350. augustus/config/species/Ostreococcus_sp_lucimarinus/Ostreococcus_sp_lucimarinus_parameters.cfg
  351. augustus/config/species/Ostreococcus_sp_lucimarinus/Ostreococcus_sp_lucimarinus_weightmatrix.txt
  352. augustus/config/species/Ostreococcus_sp_lucimarinus/README.txt
  353. augustus/config/species/Ostreococcus_tauri/Ostreococcus_tauri_exon_probs.pbl
  354. augustus/config/species/Ostreococcus_tauri/Ostreococcus_tauri_igenic_probs.pbl
  355. augustus/config/species/Ostreococcus_tauri/Ostreococcus_tauri_intron_probs.pbl
  356. augustus/config/species/Ostreococcus_tauri/Ostreococcus_tauri_metapars.cfg
  357. augustus/config/species/Ostreococcus_tauri/Ostreococcus_tauri_metapars.cgp.cfg
  358. augustus/config/species/Ostreococcus_tauri/Ostreococcus_tauri_metapars.utr.cfg
  359. augustus/config/species/Ostreococcus_tauri/Ostreococcus_tauri_parameters.cfg
  360. augustus/config/species/Ostreococcus_tauri/Ostreococcus_tauri_weightmatrix.txt
  361. augustus/config/species/Ostreococcus_tauri/README.txt
  362. augustus/config/species/Paramecium_tetraurelia/Paramecium_tetraurelia_exon_probs.pbl
  363. augustus/config/species/Paramecium_tetraurelia/Paramecium_tetraurelia_igenic_probs.pbl
  364. augustus/config/species/Paramecium_tetraurelia/Paramecium_tetraurelia_intron_probs.pbl
  365. augustus/config/species/Paramecium_tetraurelia/Paramecium_tetraurelia_metapars.cfg
  366. augustus/config/species/Paramecium_tetraurelia/Paramecium_tetraurelia_metapars.cgp.cfg
  367. augustus/config/species/Paramecium_tetraurelia/Paramecium_tetraurelia_metapars.utr.cfg
  368. augustus/config/species/Paramecium_tetraurelia/Paramecium_tetraurelia_parameters.cfg
  369. augustus/config/species/Paramecium_tetraurelia/Paramecium_tetraurelia_weightmatrix.txt
  370. augustus/config/species/Paramecium_tetraurelia/README.txt
  371. augustus/config/species/Pediculus_humanus/Pediculus_humanus_exon_probs.pbl
  372. augustus/config/species/Pediculus_humanus/Pediculus_humanus_igenic_probs.pbl
  373. augustus/config/species/Pediculus_humanus/Pediculus_humanus_intron_probs.pbl
  374. augustus/config/species/Pediculus_humanus/Pediculus_humanus_metapars.cfg
  375. augustus/config/species/Pediculus_humanus/Pediculus_humanus_metapars.cgp.cfg
  376. augustus/config/species/Pediculus_humanus/Pediculus_humanus_metapars.utr.cfg
  377. augustus/config/species/Pediculus_humanus/Pediculus_humanus_parameters.cfg
  378. augustus/config/species/Pediculus_humanus/Pediculus_humanus_weightmatrix.txt
  379. augustus/config/species/Pediculus_humanus/README.txt
  380. augustus/config/species/Perkinsus_marinus/Perkinsus_marinus_exon_probs.pbl
  381. augustus/config/species/Perkinsus_marinus/Perkinsus_marinus_igenic_probs.pbl
  382. augustus/config/species/Perkinsus_marinus/Perkinsus_marinus_intron_probs.pbl
  383. augustus/config/species/Perkinsus_marinus/Perkinsus_marinus_metapars.cfg
  384. augustus/config/species/Perkinsus_marinus/Perkinsus_marinus_metapars.cgp.cfg
  385. augustus/config/species/Perkinsus_marinus/Perkinsus_marinus_metapars.utr.cfg
  386. augustus/config/species/Perkinsus_marinus/Perkinsus_marinus_parameters.cfg
  387. augustus/config/species/Perkinsus_marinus/Perkinsus_marinus_weightmatrix.txt
  388. augustus/config/species/Perkinsus_marinus/README.txt
  389. augustus/config/species/Phaeodactylum_tricornutum/Phaeodactylum_tricornutum_exon_probs.pbl
  390. augustus/config/species/Phaeodactylum_tricornutum/Phaeodactylum_tricornutum_igenic_probs.pbl
  391. augustus/config/species/Phaeodactylum_tricornutum/Phaeodactylum_tricornutum_intron_probs.pbl
  392. augustus/config/species/Phaeodactylum_tricornutum/Phaeodactylum_tricornutum_metapars.cfg
  393. augustus/config/species/Phaeodactylum_tricornutum/Phaeodactylum_tricornutum_metapars.cgp.cfg
  394. augustus/config/species/Phaeodactylum_tricornutum/Phaeodactylum_tricornutum_metapars.utr.cfg
  395. augustus/config/species/Phaeodactylum_tricornutum/Phaeodactylum_tricornutum_parameters.cfg
  396. augustus/config/species/Phaeodactylum_tricornutum/Phaeodactylum_tricornutum_weightmatrix.txt
  397. augustus/config/species/Phaeodactylum_tricornutum/README.txt
  398. augustus/config/species/Physcomitrium_patens/Physcomitrium_patens_exon_probs.pbl
  399. augustus/config/species/Physcomitrium_patens/Physcomitrium_patens_igenic_probs.pbl
  400. augustus/config/species/Physcomitrium_patens/Physcomitrium_patens_intron_probs.pbl
  401. augustus/config/species/Physcomitrium_patens/Physcomitrium_patens_metapars.cfg
  402. augustus/config/species/Physcomitrium_patens/Physcomitrium_patens_metapars.cgp.cfg
  403. augustus/config/species/Physcomitrium_patens/Physcomitrium_patens_metapars.utr.cfg
  404. augustus/config/species/Physcomitrium_patens/Physcomitrium_patens_parameters.cfg
  405. augustus/config/species/Physcomitrium_patens/Physcomitrium_patens_weightmatrix.txt
  406. augustus/config/species/Physcomitrium_patens/README.txt
  407. augustus/config/species/Populus_trichocarpa/Populus_trichocarpa_exon_probs.pbl
  408. augustus/config/species/Populus_trichocarpa/Populus_trichocarpa_igenic_probs.pbl
  409. augustus/config/species/Populus_trichocarpa/Populus_trichocarpa_intron_probs.pbl
  410. augustus/config/species/Populus_trichocarpa/Populus_trichocarpa_metapars.cfg
  411. augustus/config/species/Populus_trichocarpa/Populus_trichocarpa_metapars.cgp.cfg
  412. augustus/config/species/Populus_trichocarpa/Populus_trichocarpa_metapars.utr.cfg
  413. augustus/config/species/Populus_trichocarpa/Populus_trichocarpa_parameters.cfg
  414. augustus/config/species/Populus_trichocarpa/Populus_trichocarpa_parameters.cfg~
  415. augustus/config/species/Populus_trichocarpa/Populus_trichocarpa_weightmatrix.txt
  416. augustus/config/species/Pseudo-nitzschia_multistriata/Pseudo-nitzschia_multistriata_exon_probs.pbl
  417. augustus/config/species/Pseudo-nitzschia_multistriata/Pseudo-nitzschia_multistriata_igenic_probs.pbl
  418. augustus/config/species/Pseudo-nitzschia_multistriata/Pseudo-nitzschia_multistriata_intron_probs.pbl
  419. augustus/config/species/Pseudo-nitzschia_multistriata/Pseudo-nitzschia_multistriata_metapars.cfg
  420. augustus/config/species/Pseudo-nitzschia_multistriata/Pseudo-nitzschia_multistriata_metapars.cgp.cfg
  421. augustus/config/species/Pseudo-nitzschia_multistriata/Pseudo-nitzschia_multistriata_metapars.utr.cfg
  422. augustus/config/species/Pseudo-nitzschia_multistriata/Pseudo-nitzschia_multistriata_parameters.cfg
  423. augustus/config/species/Pseudo-nitzschia_multistriata/Pseudo-nitzschia_multistriata_weightmatrix.txt
  424. augustus/config/species/Pseudo-nitzschia_multistriata/README.txt
  425. augustus/config/species/Ptychodera_flava/Ptychodera_flava_exon_probs.pbl
  426. augustus/config/species/Ptychodera_flava/Ptychodera_flava_igenic_probs.pbl
  427. augustus/config/species/Ptychodera_flava/Ptychodera_flava_intron_probs.pbl
  428. augustus/config/species/Ptychodera_flava/Ptychodera_flava_metapars.cfg
  429. augustus/config/species/Ptychodera_flava/Ptychodera_flava_metapars.cgp.cfg
  430. augustus/config/species/Ptychodera_flava/Ptychodera_flava_metapars.utr.cfg
  431. augustus/config/species/Ptychodera_flava/Ptychodera_flava_parameters.cfg
  432. augustus/config/species/Ptychodera_flava/Ptychodera_flava_weightmatrix.txt
  433. augustus/config/species/Ptychodera_flava/README.txt
  434. augustus/config/species/Pycnopodia_helianthoides/Pycnopodia_helianthoides_exon_probs.pbl
  435. augustus/config/species/Pycnopodia_helianthoides/Pycnopodia_helianthoides_igenic_probs.pbl
  436. augustus/config/species/Pycnopodia_helianthoides/Pycnopodia_helianthoides_intron_probs.pbl
  437. augustus/config/species/Pycnopodia_helianthoides/Pycnopodia_helianthoides_metapars.cfg
  438. augustus/config/species/Pycnopodia_helianthoides/Pycnopodia_helianthoides_metapars.cgp.cfg
  439. augustus/config/species/Pycnopodia_helianthoides/Pycnopodia_helianthoides_metapars.utr.cfg
  440. augustus/config/species/Pycnopodia_helianthoides/Pycnopodia_helianthoides_parameters.cfg
  441. augustus/config/species/Pycnopodia_helianthoides/Pycnopodia_helianthoides_weightmatrix.txt
  442. augustus/config/species/Pycnopodia_helianthoides/README.txt
  443. augustus/config/species/Raphidocelis_subcapitata/README.txt
  444. augustus/config/species/Raphidocelis_subcapitata/Raphidocelis_subcapitata_exon_probs.pbl
  445. augustus/config/species/Raphidocelis_subcapitata/Raphidocelis_subcapitata_igenic_probs.pbl
  446. augustus/config/species/Raphidocelis_subcapitata/Raphidocelis_subcapitata_intron_probs.pbl
  447. augustus/config/species/Raphidocelis_subcapitata/Raphidocelis_subcapitata_metapars.cfg
  448. augustus/config/species/Raphidocelis_subcapitata/Raphidocelis_subcapitata_metapars.cgp.cfg
  449. augustus/config/species/Raphidocelis_subcapitata/Raphidocelis_subcapitata_metapars.utr.cfg
  450. augustus/config/species/Raphidocelis_subcapitata/Raphidocelis_subcapitata_parameters.cfg
  451. augustus/config/species/Raphidocelis_subcapitata/Raphidocelis_subcapitata_weightmatrix.txt
  452. augustus/config/species/Rhopilema_esculentum/README.txt
  453. augustus/config/species/Rhopilema_esculentum/Rhopilema_esculentum_exon_probs.pbl
  454. augustus/config/species/Rhopilema_esculentum/Rhopilema_esculentum_igenic_probs.pbl
  455. augustus/config/species/Rhopilema_esculentum/Rhopilema_esculentum_intron_probs.pbl
  456. augustus/config/species/Rhopilema_esculentum/Rhopilema_esculentum_metapars.cfg
  457. augustus/config/species/Rhopilema_esculentum/Rhopilema_esculentum_metapars.cgp.cfg
  458. augustus/config/species/Rhopilema_esculentum/Rhopilema_esculentum_metapars.utr.cfg
  459. augustus/config/species/Rhopilema_esculentum/Rhopilema_esculentum_parameters.cfg
  460. augustus/config/species/Rhopilema_esculentum/Rhopilema_esculentum_weightmatrix.txt
  461. augustus/config/species/Ricinus_communis/README.txt
  462. augustus/config/species/Ricinus_communis/Ricinus_communis_exon_probs.pbl
  463. augustus/config/species/Ricinus_communis/Ricinus_communis_igenic_probs.pbl
  464. augustus/config/species/Ricinus_communis/Ricinus_communis_intron_probs.pbl
  465. augustus/config/species/Ricinus_communis/Ricinus_communis_metapars.cfg
  466. augustus/config/species/Ricinus_communis/Ricinus_communis_metapars.cgp.cfg
  467. augustus/config/species/Ricinus_communis/Ricinus_communis_metapars.utr.cfg
  468. augustus/config/species/Ricinus_communis/Ricinus_communis_parameters.cfg
  469. augustus/config/species/Ricinus_communis/Ricinus_communis_weightmatrix.txt
  470. augustus/config/species/Sclerotinia_sclerotiorum/README.txt
  471. augustus/config/species/Sclerotinia_sclerotiorum/Sclerotinia_sclerotiorum_exon_probs.pbl
  472. augustus/config/species/Sclerotinia_sclerotiorum/Sclerotinia_sclerotiorum_igenic_probs.pbl
  473. augustus/config/species/Sclerotinia_sclerotiorum/Sclerotinia_sclerotiorum_intron_probs.pbl
  474. augustus/config/species/Sclerotinia_sclerotiorum/Sclerotinia_sclerotiorum_metapars.cfg
  475. augustus/config/species/Sclerotinia_sclerotiorum/Sclerotinia_sclerotiorum_metapars.cgp.cfg
  476. augustus/config/species/Sclerotinia_sclerotiorum/Sclerotinia_sclerotiorum_metapars.utr.cfg
  477. augustus/config/species/Sclerotinia_sclerotiorum/Sclerotinia_sclerotiorum_parameters.cfg
  478. augustus/config/species/Sclerotinia_sclerotiorum/Sclerotinia_sclerotiorum_weightmatrix.txt
  479. augustus/config/species/Skeletonema_costatum/README.txt
  480. augustus/config/species/Skeletonema_costatum/Skeletonema_costatum_exon_probs.pbl
  481. augustus/config/species/Skeletonema_costatum/Skeletonema_costatum_igenic_probs.pbl
  482. augustus/config/species/Skeletonema_costatum/Skeletonema_costatum_intron_probs.pbl
  483. augustus/config/species/Skeletonema_costatum/Skeletonema_costatum_metapars.cfg
  484. augustus/config/species/Skeletonema_costatum/Skeletonema_costatum_metapars.cgp.cfg
  485. augustus/config/species/Skeletonema_costatum/Skeletonema_costatum_metapars.utr.cfg
  486. augustus/config/species/Skeletonema_costatum/Skeletonema_costatum_parameters.cfg
  487. augustus/config/species/Skeletonema_costatum/Skeletonema_costatum_weightmatrix.txt
  488. augustus/config/species/Sordaria_macrospora/README.txt
  489. augustus/config/species/Sordaria_macrospora/Sordaria_macrospora_exon_probs.pbl
  490. augustus/config/species/Sordaria_macrospora/Sordaria_macrospora_igenic_probs.pbl
  491. augustus/config/species/Sordaria_macrospora/Sordaria_macrospora_intron_probs.pbl
  492. augustus/config/species/Sordaria_macrospora/Sordaria_macrospora_metapars.cfg
  493. augustus/config/species/Sordaria_macrospora/Sordaria_macrospora_metapars.cgp.cfg
  494. augustus/config/species/Sordaria_macrospora/Sordaria_macrospora_metapars.utr.cfg
  495. augustus/config/species/Sordaria_macrospora/Sordaria_macrospora_parameters.cfg
  496. augustus/config/species/Sordaria_macrospora/Sordaria_macrospora_weightmatrix.txt
  497. augustus/config/species/Sphaceloma_murrayae/README.txt
  498. augustus/config/species/Sphaceloma_murrayae/Sphaceloma_murrayae_exon_probs.pbl
  499. augustus/config/species/Sphaceloma_murrayae/Sphaceloma_murrayae_igenic_probs.pbl
  500. augustus/config/species/Sphaceloma_murrayae/Sphaceloma_murrayae_intron_probs.pbl
  501. augustus/config/species/Sphaceloma_murrayae/Sphaceloma_murrayae_metapars.cfg
  502. augustus/config/species/Sphaceloma_murrayae/Sphaceloma_murrayae_metapars.cgp.cfg
  503. augustus/config/species/Sphaceloma_murrayae/Sphaceloma_murrayae_metapars.utr.cfg
  504. augustus/config/species/Sphaceloma_murrayae/Sphaceloma_murrayae_parameters.cfg
  505. augustus/config/species/Sphaceloma_murrayae/Sphaceloma_murrayae_weightmatrix.txt
  506. augustus/config/species/Taeniopygia_guttata/README.txt
  507. augustus/config/species/Taeniopygia_guttata/Taeniopygia_guttata_exon_probs.pbl
  508. augustus/config/species/Taeniopygia_guttata/Taeniopygia_guttata_igenic_probs.pbl
  509. augustus/config/species/Taeniopygia_guttata/Taeniopygia_guttata_intron_probs.pbl
  510. augustus/config/species/Taeniopygia_guttata/Taeniopygia_guttata_metapars.cfg
  511. augustus/config/species/Taeniopygia_guttata/Taeniopygia_guttata_metapars.cgp.cfg
  512. augustus/config/species/Taeniopygia_guttata/Taeniopygia_guttata_metapars.utr.cfg
  513. augustus/config/species/Taeniopygia_guttata/Taeniopygia_guttata_parameters.cfg
  514. augustus/config/species/Taeniopygia_guttata/Taeniopygia_guttata_weightmatrix.txt
  515. augustus/config/species/Thalassiosira_pseudonana_CCMP1335/README.txt
  516. augustus/config/species/Thalassiosira_pseudonana_CCMP1335/Thalassiosira_pseudonana_CCMP1335_exon_probs.pbl
  517. augustus/config/species/Thalassiosira_pseudonana_CCMP1335/Thalassiosira_pseudonana_CCMP1335_igenic_probs.pbl
  518. augustus/config/species/Thalassiosira_pseudonana_CCMP1335/Thalassiosira_pseudonana_CCMP1335_intron_probs.pbl
  519. augustus/config/species/Thalassiosira_pseudonana_CCMP1335/Thalassiosira_pseudonana_CCMP1335_metapars.cfg
  520. augustus/config/species/Thalassiosira_pseudonana_CCMP1335/Thalassiosira_pseudonana_CCMP1335_metapars.cgp.cfg
  521. augustus/config/species/Thalassiosira_pseudonana_CCMP1335/Thalassiosira_pseudonana_CCMP1335_metapars.utr.cfg
  522. augustus/config/species/Thalassiosira_pseudonana_CCMP1335/Thalassiosira_pseudonana_CCMP1335_parameters.cfg
  523. augustus/config/species/Thalassiosira_pseudonana_CCMP1335/Thalassiosira_pseudonana_CCMP1335_weightmatrix.txt
  524. augustus/config/species/Trichoplax_adhaerens/README.txt
  525. augustus/config/species/Trichoplax_adhaerens/Trichoplax_adhaerens_exon_probs.pbl
  526. augustus/config/species/Trichoplax_adhaerens/Trichoplax_adhaerens_igenic_probs.pbl
  527. augustus/config/species/Trichoplax_adhaerens/Trichoplax_adhaerens_intron_probs.pbl
  528. augustus/config/species/Trichoplax_adhaerens/Trichoplax_adhaerens_metapars.cfg
  529. augustus/config/species/Trichoplax_adhaerens/Trichoplax_adhaerens_metapars.cgp.cfg
  530. augustus/config/species/Trichoplax_adhaerens/Trichoplax_adhaerens_metapars.utr.cfg
  531. augustus/config/species/Trichoplax_adhaerens/Trichoplax_adhaerens_parameters.cfg
  532. augustus/config/species/Trichoplax_adhaerens/Trichoplax_adhaerens_weightmatrix.txt
  533. augustus/config/species/Trypanosoma_cruzi/README.txt
  534. augustus/config/species/Trypanosoma_cruzi/Trypanosoma_cruzi_exon_probs.pbl
  535. augustus/config/species/Trypanosoma_cruzi/Trypanosoma_cruzi_igenic_probs.pbl
  536. augustus/config/species/Trypanosoma_cruzi/Trypanosoma_cruzi_intron_probs.pbl
  537. augustus/config/species/Trypanosoma_cruzi/Trypanosoma_cruzi_metapars.cfg
  538. augustus/config/species/Trypanosoma_cruzi/Trypanosoma_cruzi_metapars.cgp.cfg
  539. augustus/config/species/Trypanosoma_cruzi/Trypanosoma_cruzi_metapars.utr.cfg
  540. augustus/config/species/Trypanosoma_cruzi/Trypanosoma_cruzi_parameters.cfg
  541. augustus/config/species/Trypanosoma_cruzi/Trypanosoma_cruzi_weightmatrix.txt
  542. augustus/config/species/Vitis_vinifera/README.txt
  543. augustus/config/species/Vitis_vinifera/Vitis_vinifera_exon_probs.pbl
  544. augustus/config/species/Vitis_vinifera/Vitis_vinifera_igenic_probs.pbl
  545. augustus/config/species/Vitis_vinifera/Vitis_vinifera_intron_probs.pbl
  546. augustus/config/species/Vitis_vinifera/Vitis_vinifera_metapars.cfg
  547. augustus/config/species/Vitis_vinifera/Vitis_vinifera_metapars.cgp.cfg
  548. augustus/config/species/Vitis_vinifera/Vitis_vinifera_metapars.utr.cfg
  549. augustus/config/species/Vitis_vinifera/Vitis_vinifera_parameters.cfg
  550. augustus/config/species/Vitis_vinifera/Vitis_vinifera_weightmatrix.txt
  551. augustus/config/species/Vitrella_brassicaformis/README.txt
  552. augustus/config/species/Vitrella_brassicaformis/Vitrella_brassicaformis_exon_probs.pbl
  553. augustus/config/species/Vitrella_brassicaformis/Vitrella_brassicaformis_igenic_probs.pbl
  554. augustus/config/species/Vitrella_brassicaformis/Vitrella_brassicaformis_intron_probs.pbl
  555. augustus/config/species/Vitrella_brassicaformis/Vitrella_brassicaformis_metapars.cfg
  556. augustus/config/species/Vitrella_brassicaformis/Vitrella_brassicaformis_metapars.cgp.cfg
  557. augustus/config/species/Vitrella_brassicaformis/Vitrella_brassicaformis_metapars.utr.cfg
  558. augustus/config/species/Vitrella_brassicaformis/Vitrella_brassicaformis_parameters.cfg
  559. augustus/config/species/Vitrella_brassicaformis/Vitrella_brassicaformis_weightmatrix.txt
  560. augustus/config/species/Xenopus_tropicalis/Xenopus_tropicalis_exon_probs.pbl
  561. augustus/config/species/Xenopus_tropicalis/Xenopus_tropicalis_igenic_probs.pbl
  562. augustus/config/species/Xenopus_tropicalis/Xenopus_tropicalis_intron_probs.pbl
  563. augustus/config/species/Xenopus_tropicalis/Xenopus_tropicalis_metapars.cfg
  564. augustus/config/species/Xenopus_tropicalis/Xenopus_tropicalis_metapars.cgp.cfg
  565. augustus/config/species/Xenopus_tropicalis/Xenopus_tropicalis_metapars.utr.cfg
  566. augustus/config/species/Xenopus_tropicalis/Xenopus_tropicalis_parameters.cfg
  567. augustus/config/species/Xenopus_tropicalis/Xenopus_tropicalis_weightmatrix.txt
  568. augustus/config/species/Xiphophorus_maculatus/README.txt
  569. augustus/config/species/Xiphophorus_maculatus/Xiphophorus_maculatus_exon_probs.pbl
  570. augustus/config/species/Xiphophorus_maculatus/Xiphophorus_maculatus_igenic_probs.pbl
  571. augustus/config/species/Xiphophorus_maculatus/Xiphophorus_maculatus_intron_probs.pbl
  572. augustus/config/species/Xiphophorus_maculatus/Xiphophorus_maculatus_parameters.cfg
  573. augustus/config/species/Xiphophorus_maculatus/Xiphophorus_maculatus_utr_probs.pbl
  574. augustus/config/species/Xiphophorus_maculatus/Xiphophorus_maculatus_weightmatrix.txt
  575. augustus/config/species/Xipophorus_maculatus/Xipophorus_maculatus_exon_probs.pbl
  576. augustus/config/species/Xipophorus_maculatus/Xipophorus_maculatus_igenic_probs.pbl
  577. augustus/config/species/Xipophorus_maculatus/Xipophorus_maculatus_intron_probs.pbl
  578. augustus/config/species/Xipophorus_maculatus/Xipophorus_maculatus_parameters.cfg
  579. augustus/config/species/Xipophorus_maculatus/Xipophorus_maculatus_utr_probs.pbl
  580. augustus/config/species/Xipophorus_maculatus/Xipophorus_maculatus_weightmatrix.txt
  581. augustus/config/species/adorsata/adorsata_parameters.cfg
  582. augustus/config/species/adorsata/adorsata_weightmatrix.txt
  583. augustus/config/species/adorsata/generic_exon_probs.pbl
  584. augustus/config/species/adorsata/generic_igenic_probs.pbl
  585. augustus/config/species/adorsata/generic_intron_probs.pbl
  586. augustus/config/species/adorsata/generic_weightmatrix.txt
  587. augustus/config/species/aedes/aedes_exon_probs.pbl
  588. augustus/config/species/aedes/aedes_igenic_probs.pbl
  589. augustus/config/species/aedes/aedes_intron_probs.pbl
  590. augustus/config/species/aedes/aedes_parameters.cfg
  591. augustus/config/species/aedes/aedes_weightmatrix.txt
  592. augustus/config/species/amphimedon/amphimedon_exon_probs.pbl
  593. augustus/config/species/amphimedon/amphimedon_igenic_probs.pbl
  594. augustus/config/species/amphimedon/amphimedon_intron_probs.pbl
  595. augustus/config/species/amphimedon/amphimedon_metapars.cfg
  596. augustus/config/species/amphimedon/amphimedon_parameters.cfg
  597. augustus/config/species/amphimedon/amphimedon_utr_probs.pbl
  598. augustus/config/species/amphimedon/amphimedon_weightmatrix.txt
  599. augustus/config/species/ancylostoma_ceylanicum/README.TXT
  600. augustus/config/species/ancylostoma_ceylanicum/ancylostoma_ceylanicum_exon_probs.pbl
  601. augustus/config/species/ancylostoma_ceylanicum/ancylostoma_ceylanicum_igenic_probs.pbl
  602. augustus/config/species/ancylostoma_ceylanicum/ancylostoma_ceylanicum_intron_probs.pbl
  603. augustus/config/species/ancylostoma_ceylanicum/ancylostoma_ceylanicum_metapars.cfg
  604. augustus/config/species/ancylostoma_ceylanicum/ancylostoma_ceylanicum_metapars.utr.cfg
  605. augustus/config/species/ancylostoma_ceylanicum/ancylostoma_ceylanicum_parameters.cfg
  606. augustus/config/species/ancylostoma_ceylanicum/ancylostoma_ceylanicum_weightmatrix.txt
  607. augustus/config/species/anidulans/anidulans_exon_probs.pbl
  608. augustus/config/species/anidulans/anidulans_igenic_probs.pbl
  609. augustus/config/species/anidulans/anidulans_intron_probs.pbl
  610. augustus/config/species/anidulans/anidulans_parameters.cfg
  611. augustus/config/species/anidulans/anidulans_weightmatrix.txt
  612. augustus/config/species/arabidopsis/arabidopsis_exon_probs.pbl
  613. augustus/config/species/arabidopsis/arabidopsis_igenic_probs.pbl
  614. augustus/config/species/arabidopsis/arabidopsis_intron_probs.pbl
  615. augustus/config/species/arabidopsis/arabidopsis_parameters.cfg
  616. augustus/config/species/arabidopsis/arabidopsis_utr_probs.pbl
  617. augustus/config/species/arabidopsis/arabidopsis_weightmatrix.txt
  618. augustus/config/species/aspergillus_fumigatus/aspergillus_fumigatus_exon_probs.pbl
  619. augustus/config/species/aspergillus_fumigatus/aspergillus_fumigatus_igenic_probs.pbl
  620. augustus/config/species/aspergillus_fumigatus/aspergillus_fumigatus_intron_probs.pbl
  621. augustus/config/species/aspergillus_fumigatus/aspergillus_fumigatus_metapars.cfg
  622. augustus/config/species/aspergillus_fumigatus/aspergillus_fumigatus_parameters.cfg
  623. augustus/config/species/aspergillus_fumigatus/aspergillus_fumigatus_weightmatrix.txt
  624. augustus/config/species/aspergillus_nidulans/aspergillus_nidulans_exon_probs.pbl
  625. augustus/config/species/aspergillus_nidulans/aspergillus_nidulans_igenic_probs.pbl
  626. augustus/config/species/aspergillus_nidulans/aspergillus_nidulans_intron_probs.pbl
  627. augustus/config/species/aspergillus_nidulans/aspergillus_nidulans_metapars.cfg
  628. augustus/config/species/aspergillus_nidulans/aspergillus_nidulans_parameters.cfg
  629. augustus/config/species/aspergillus_nidulans/aspergillus_nidulans_weightmatrix.txt
  630. augustus/config/species/aspergillus_oryzae/aspergillus_oryzae_exon_probs.pbl
  631. augustus/config/species/aspergillus_oryzae/aspergillus_oryzae_igenic_probs.pbl
  632. augustus/config/species/aspergillus_oryzae/aspergillus_oryzae_intron_probs.pbl
  633. augustus/config/species/aspergillus_oryzae/aspergillus_oryzae_metapars.cfg
  634. augustus/config/species/aspergillus_oryzae/aspergillus_oryzae_parameters.cfg
  635. augustus/config/species/aspergillus_oryzae/aspergillus_oryzae_weightmatrix.txt
  636. augustus/config/species/aspergillus_terreus/aspergillus_terreus_exon_probs.pbl
  637. augustus/config/species/aspergillus_terreus/aspergillus_terreus_igenic_probs.pbl
  638. augustus/config/species/aspergillus_terreus/aspergillus_terreus_intron_probs.pbl
  639. augustus/config/species/aspergillus_terreus/aspergillus_terreus_metapars.cfg
  640. augustus/config/species/aspergillus_terreus/aspergillus_terreus_parameters.cfg
  641. augustus/config/species/aspergillus_terreus/aspergillus_terreus_weightmatrix.txt
  642. augustus/config/species/b_pseudomallei/b_pseudomallei_exon_probs.pbl
  643. augustus/config/species/b_pseudomallei/b_pseudomallei_igenic_probs.pbl
  644. augustus/config/species/b_pseudomallei/b_pseudomallei_metapars.cfg
  645. augustus/config/species/b_pseudomallei/b_pseudomallei_metapars.utr.cfg
  646. augustus/config/species/b_pseudomallei/b_pseudomallei_ovlp_len.pbl
  647. augustus/config/species/b_pseudomallei/b_pseudomallei_parameters.cfg
  648. augustus/config/species/b_pseudomallei/b_pseudomallei_parameters.cfg.orig1
  649. augustus/config/species/b_pseudomallei/b_pseudomallei_parameters.cfg.orig2
  650. augustus/config/species/b_pseudomallei/b_pseudomallei_trans_shadow_bacterium.pbl
  651. augustus/config/species/b_pseudomallei/b_pseudomallei_weightmatrix.txt
  652. augustus/config/species/bombus_impatiens1/bombus_impatiens1_exon_probs.pbl
  653. augustus/config/species/bombus_impatiens1/bombus_impatiens1_exon_probs.pbl.withoutCRF
  654. augustus/config/species/bombus_impatiens1/bombus_impatiens1_igenic_probs.pbl
  655. augustus/config/species/bombus_impatiens1/bombus_impatiens1_igenic_probs.pbl.withoutCRF
  656. augustus/config/species/bombus_impatiens1/bombus_impatiens1_intron_probs.pbl
  657. augustus/config/species/bombus_impatiens1/bombus_impatiens1_intron_probs.pbl.withoutCRF
  658. augustus/config/species/bombus_impatiens1/bombus_impatiens1_metapars.cfg
  659. augustus/config/species/bombus_impatiens1/bombus_impatiens1_metapars.utr.cfg
  660. augustus/config/species/bombus_impatiens1/bombus_impatiens1_parameters.cfg
  661. augustus/config/species/bombus_impatiens1/bombus_impatiens1_parameters.cfg.orig1
  662. augustus/config/species/bombus_impatiens1/bombus_impatiens1_parameters.cfg.orig2
  663. augustus/config/species/bombus_impatiens1/bombus_impatiens1_parameters.cfg.orig3
  664. augustus/config/species/bombus_impatiens1/bombus_impatiens1_parameters.cfg.orig4
  665. augustus/config/species/bombus_impatiens1/bombus_impatiens1_parameters.cfg.orig5
  666. augustus/config/species/bombus_impatiens1/bombus_impatiens1_weightmatrix.txt
  667. augustus/config/species/bombus_terrestris2/bombus_terrestris2_exon_probs.pbl
  668. augustus/config/species/bombus_terrestris2/bombus_terrestris2_exon_probs.pbl.withoutCRF
  669. augustus/config/species/bombus_terrestris2/bombus_terrestris2_igenic_probs.pbl
  670. augustus/config/species/bombus_terrestris2/bombus_terrestris2_igenic_probs.pbl.withoutCRF
  671. augustus/config/species/bombus_terrestris2/bombus_terrestris2_intron_probs.pbl
  672. augustus/config/species/bombus_terrestris2/bombus_terrestris2_intron_probs.pbl.withoutCRF
  673. augustus/config/species/bombus_terrestris2/bombus_terrestris2_metapars.cfg
  674. augustus/config/species/bombus_terrestris2/bombus_terrestris2_metapars.utr.cfg
  675. augustus/config/species/bombus_terrestris2/bombus_terrestris2_parameters.cfg
  676. augustus/config/species/bombus_terrestris2/bombus_terrestris2_parameters.cfg.orig1
  677. augustus/config/species/bombus_terrestris2/bombus_terrestris2_parameters.cfg.orig2
  678. augustus/config/species/bombus_terrestris2/bombus_terrestris2_parameters.cfg.orig3
  679. augustus/config/species/bombus_terrestris2/bombus_terrestris2_parameters.cfg.orig4
  680. augustus/config/species/bombus_terrestris2/bombus_terrestris2_utr_probs.pbl
  681. augustus/config/species/bombus_terrestris2/bombus_terrestris2_weightmatrix.txt
  682. augustus/config/species/botrytis_cinerea/botrytis_cinerea_exon_probs.pbl
  683. augustus/config/species/botrytis_cinerea/botrytis_cinerea_igenic_probs.pbl
  684. augustus/config/species/botrytis_cinerea/botrytis_cinerea_intron_probs.pbl
  685. augustus/config/species/botrytis_cinerea/botrytis_cinerea_metapars.cfg
  686. augustus/config/species/botrytis_cinerea/botrytis_cinerea_parameters.cfg
  687. augustus/config/species/botrytis_cinerea/botrytis_cinerea_weightmatrix.txt
  688. augustus/config/species/brugia/brugia_exon_probs.pbl
  689. augustus/config/species/brugia/brugia_igenic_probs.pbl
  690. augustus/config/species/brugia/brugia_intron_probs.pbl
  691. augustus/config/species/brugia/brugia_parameters.cfg
  692. augustus/config/species/brugia/brugia_splicefile
  693. augustus/config/species/brugia/brugia_weightmatrix.txt
  694. augustus/config/species/c_elegans_trsk/c_elegans_trsk_exon_probs.pbl
  695. augustus/config/species/c_elegans_trsk/c_elegans_trsk_exon_probs.pbl.withoutCRF
  696. augustus/config/species/c_elegans_trsk/c_elegans_trsk_igenic_probs.pbl
  697. augustus/config/species/c_elegans_trsk/c_elegans_trsk_igenic_probs.pbl.withoutCRF
  698. augustus/config/species/c_elegans_trsk/c_elegans_trsk_intron_probs.pbl
  699. augustus/config/species/c_elegans_trsk/c_elegans_trsk_intron_probs.pbl.withoutCRF
  700. augustus/config/species/c_elegans_trsk/c_elegans_trsk_metapars.cfg
  701. augustus/config/species/c_elegans_trsk/c_elegans_trsk_metapars.utr.cfg
  702. augustus/config/species/c_elegans_trsk/c_elegans_trsk_parameters.cfg
  703. augustus/config/species/c_elegans_trsk/c_elegans_trsk_utr_probs.pbl
  704. augustus/config/species/c_elegans_trsk/c_elegans_trsk_weightmatrix.txt
  705. augustus/config/species/cacao/cacao_exon_probs.pbl
  706. augustus/config/species/cacao/cacao_igenic_probs.pbl
  707. augustus/config/species/cacao/cacao_intron_probs.pbl
  708. augustus/config/species/cacao/cacao_metapars.cfg
  709. augustus/config/species/cacao/cacao_metapars.utr.cfg
  710. augustus/config/species/cacao/cacao_parameters.cfg
  711. augustus/config/species/cacao/cacao_utr_probs.pbl
  712. augustus/config/species/cacao/cacao_weightmatrix.txt
  713. augustus/config/species/caenorhabditis/caenorhabditis_exon_probs.pbl
  714. augustus/config/species/caenorhabditis/caenorhabditis_igenic_probs.pbl
  715. augustus/config/species/caenorhabditis/caenorhabditis_intron_probs.pbl
  716. augustus/config/species/caenorhabditis/caenorhabditis_metapars.cfg
  717. augustus/config/species/caenorhabditis/caenorhabditis_parameters.cfg
  718. augustus/config/species/caenorhabditis/caenorhabditis_trans_shadow_partial_utr.pbl
  719. augustus/config/species/caenorhabditis/caenorhabditis_utr_probs.pbl
  720. augustus/config/species/caenorhabditis/caenorhabditis_weightmatrix.txt
  721. augustus/config/species/camponotus_floridanus/README.TXT
  722. augustus/config/species/camponotus_floridanus/camponotus_floridanus_exon_probs.pbl
  723. augustus/config/species/camponotus_floridanus/camponotus_floridanus_igenic_probs.pbl
  724. augustus/config/species/camponotus_floridanus/camponotus_floridanus_intron_probs.pbl
  725. augustus/config/species/camponotus_floridanus/camponotus_floridanus_metapars.cfg
  726. augustus/config/species/camponotus_floridanus/camponotus_floridanus_metapars.utr.cfg
  727. augustus/config/species/camponotus_floridanus/camponotus_floridanus_parameters.cfg
  728. augustus/config/species/camponotus_floridanus/camponotus_floridanus_weightmatrix.txt
  729. augustus/config/species/candida_albicans/candida_albicans_exon_probs.pbl
  730. augustus/config/species/candida_albicans/candida_albicans_igenic_probs.pbl
  731. augustus/config/species/candida_albicans/candida_albicans_intron_probs.pbl
  732. augustus/config/species/candida_albicans/candida_albicans_metapars.cfg
  733. augustus/config/species/candida_albicans/candida_albicans_parameters.cfg
  734. augustus/config/species/candida_albicans/candida_albicans_weightmatrix.txt
  735. augustus/config/species/candida_guilliermondii/candida_guilliermondii_exon_probs.pbl
  736. augustus/config/species/candida_guilliermondii/candida_guilliermondii_igenic_probs.pbl
  737. augustus/config/species/candida_guilliermondii/candida_guilliermondii_intron_probs.pbl
  738. augustus/config/species/candida_guilliermondii/candida_guilliermondii_metapars.cfg
  739. augustus/config/species/candida_guilliermondii/candida_guilliermondii_parameters.cfg
  740. augustus/config/species/candida_guilliermondii/candida_guilliermondii_weightmatrix.txt
  741. augustus/config/species/candida_tropicalis/candida_tropicalis_exon_probs.pbl
  742. augustus/config/species/candida_tropicalis/candida_tropicalis_igenic_probs.pbl
  743. augustus/config/species/candida_tropicalis/candida_tropicalis_intron_probs.pbl
  744. augustus/config/species/candida_tropicalis/candida_tropicalis_metapars.cfg
  745. augustus/config/species/candida_tropicalis/candida_tropicalis_parameters.cfg
  746. augustus/config/species/candida_tropicalis/candida_tropicalis_weightmatrix.txt
  747. augustus/config/species/chaetomium_globosum/chaetomium_globosum_exon_probs.pbl
  748. augustus/config/species/chaetomium_globosum/chaetomium_globosum_igenic_probs.pbl
  749. augustus/config/species/chaetomium_globosum/chaetomium_globosum_intron_probs.pbl
  750. augustus/config/species/chaetomium_globosum/chaetomium_globosum_metapars.cfg
  751. augustus/config/species/chaetomium_globosum/chaetomium_globosum_parameters.cfg
  752. augustus/config/species/chaetomium_globosum/chaetomium_globosum_weightmatrix.txt
  753. augustus/config/species/chicken/README.TXT
  754. augustus/config/species/chicken/chicken_exon_probs.pbl
  755. augustus/config/species/chicken/chicken_igenic_probs.pbl
  756. augustus/config/species/chicken/chicken_intron_probs.pbl
  757. augustus/config/species/chicken/chicken_metapars.cfg
  758. augustus/config/species/chicken/chicken_metapars.utr.cfg
  759. augustus/config/species/chicken/chicken_parameters.cfg
  760. augustus/config/species/chicken/chicken_weightmatrix.txt
  761. augustus/config/species/chiloscyllium/chiloscyllium_exon_probs.pbl
  762. augustus/config/species/chiloscyllium/chiloscyllium_igenic_probs.pbl
  763. augustus/config/species/chiloscyllium/chiloscyllium_intron_probs.pbl
  764. augustus/config/species/chiloscyllium/chiloscyllium_metapars.cfg
  765. augustus/config/species/chiloscyllium/chiloscyllium_metapars.cgp.cfg
  766. augustus/config/species/chiloscyllium/chiloscyllium_metapars.utr.cfg
  767. augustus/config/species/chiloscyllium/chiloscyllium_parameters.cfg
  768. augustus/config/species/chiloscyllium/chiloscyllium_parameters.cfg.orig1
  769. augustus/config/species/chiloscyllium/chiloscyllium_weightmatrix.txt
  770. augustus/config/species/chlamy2011/chlamy2011_exon_probs.pbl
  771. augustus/config/species/chlamy2011/chlamy2011_igenic_probs.pbl
  772. augustus/config/species/chlamy2011/chlamy2011_intron_probs.pbl
  773. augustus/config/species/chlamy2011/chlamy2011_metapars.cfg
  774. augustus/config/species/chlamy2011/chlamy2011_metapars.utr.cfg
  775. augustus/config/species/chlamy2011/chlamy2011_parameters.cfg
  776. augustus/config/species/chlamy2011/chlamy2011_trans_shadow_partial.pbl
  777. augustus/config/species/chlamy2011/chlamy2011_trans_shadow_partial_utr.pbl
  778. augustus/config/species/chlamy2011/chlamy2011_utr_probs.pbl
  779. augustus/config/species/chlamy2011/chlamy2011_weightmatrix.txt
  780. augustus/config/species/chlamydomonas/chlamydomonas_exon_probs.pbl
  781. augustus/config/species/chlamydomonas/chlamydomonas_igenic_probs.pbl
  782. augustus/config/species/chlamydomonas/chlamydomonas_intron_probs.pbl
  783. augustus/config/species/chlamydomonas/chlamydomonas_metapars.cfg
  784. augustus/config/species/chlamydomonas/chlamydomonas_parameters.cfg
  785. augustus/config/species/chlamydomonas/chlamydomonas_trans_shadow_partial.pbl
  786. augustus/config/species/chlamydomonas/chlamydomonas_trans_shadow_partial_utr.pbl
  787. augustus/config/species/chlamydomonas/chlamydomonas_utr_probs.pbl
  788. augustus/config/species/chlamydomonas/chlamydomonas_weightmatrix.txt
  789. augustus/config/species/chlorella/chlorella_exon_probs.pbl
  790. augustus/config/species/chlorella/chlorella_igenic_probs.pbl
  791. augustus/config/species/chlorella/chlorella_intron_probs.pbl
  792. augustus/config/species/chlorella/chlorella_metapars.cfg
  793. augustus/config/species/chlorella/chlorella_metapars.utr.cfg
  794. augustus/config/species/chlorella/chlorella_parameters.cfg
  795. augustus/config/species/chlorella/chlorella_utr_probs.pbl
  796. augustus/config/species/chlorella/chlorella_weightmatrix.txt
  797. augustus/config/species/ciona/README.TXT
  798. augustus/config/species/ciona/ciona_exon_probs.pbl
  799. augustus/config/species/ciona/ciona_igenic_probs.pbl
  800. augustus/config/species/ciona/ciona_intron_probs.pbl
  801. augustus/config/species/ciona/ciona_metapars.cfg
  802. augustus/config/species/ciona/ciona_metapars.cgp.cfg
  803. augustus/config/species/ciona/ciona_metapars.utr.cfg
  804. augustus/config/species/ciona/ciona_parameters.cfg
  805. augustus/config/species/ciona/ciona_parameters.cfg.orig1
  806. augustus/config/species/ciona/ciona_weightmatrix.txt
  807. augustus/config/species/coccidioides_immitis/coccidioides_immitis_exon_probs.pbl
  808. augustus/config/species/coccidioides_immitis/coccidioides_immitis_igenic_probs.pbl
  809. augustus/config/species/coccidioides_immitis/coccidioides_immitis_intron_probs.pbl
  810. augustus/config/species/coccidioides_immitis/coccidioides_immitis_metapars.cfg
  811. augustus/config/species/coccidioides_immitis/coccidioides_immitis_parameters.cfg
  812. augustus/config/species/coccidioides_immitis/coccidioides_immitis_weightmatrix.txt
  813. augustus/config/species/coprinus/coprinus_exon_probs.pbl
  814. augustus/config/species/coprinus/coprinus_igenic_probs.pbl
  815. augustus/config/species/coprinus/coprinus_intron_probs.pbl
  816. augustus/config/species/coprinus/coprinus_parameters.cfg
  817. augustus/config/species/coprinus/coprinus_weightmatrix.txt
  818. augustus/config/species/coprinus_cinereus/coprinus_cinereus_exon_probs.pbl
  819. augustus/config/species/coprinus_cinereus/coprinus_cinereus_igenic_probs.pbl
  820. augustus/config/species/coprinus_cinereus/coprinus_cinereus_intron_probs.pbl
  821. augustus/config/species/coprinus_cinereus/coprinus_cinereus_metapars.cfg
  822. augustus/config/species/coprinus_cinereus/coprinus_cinereus_parameters.cfg
  823. augustus/config/species/coprinus_cinereus/coprinus_cinereus_weightmatrix.txt
  824. augustus/config/species/coyote_tobacco/coyote_tobacco_exon_probs.pbl
  825. augustus/config/species/coyote_tobacco/coyote_tobacco_igenic_probs.pbl
  826. augustus/config/species/coyote_tobacco/coyote_tobacco_intron_probs.pbl
  827. augustus/config/species/coyote_tobacco/coyote_tobacco_metapars.cfg
  828. augustus/config/species/coyote_tobacco/coyote_tobacco_metapars.utr.cfg
  829. augustus/config/species/coyote_tobacco/coyote_tobacco_parameters.cfg
  830. augustus/config/species/coyote_tobacco/coyote_tobacco_trans_shadow_partial_utr.pbl
  831. augustus/config/species/coyote_tobacco/coyote_tobacco_utr_probs.pbl
  832. augustus/config/species/coyote_tobacco/coyote_tobacco_weightmatrix.txt
  833. augustus/config/species/cryptococcus/cryptococcus_exon_probs.pbl
  834. augustus/config/species/cryptococcus/cryptococcus_igenic_probs.pbl
  835. augustus/config/species/cryptococcus/cryptococcus_intron_probs.pbl
  836. augustus/config/species/cryptococcus/cryptococcus_parameters.cfg
  837. augustus/config/species/cryptococcus/cryptococcus_weightmatrix.txt
  838. augustus/config/species/cryptococcus_neoformans_gattii/cryptococcus_neoformans_gattii_exon_probs.pbl
  839. augustus/config/species/cryptococcus_neoformans_gattii/cryptococcus_neoformans_gattii_igenic_probs.pbl
  840. augustus/config/species/cryptococcus_neoformans_gattii/cryptococcus_neoformans_gattii_intron_probs.pbl
  841. augustus/config/species/cryptococcus_neoformans_gattii/cryptococcus_neoformans_gattii_metapars.cfg
  842. augustus/config/species/cryptococcus_neoformans_gattii/cryptococcus_neoformans_gattii_parameters.cfg
  843. augustus/config/species/cryptococcus_neoformans_gattii/cryptococcus_neoformans_gattii_weightmatrix.txt
  844. augustus/config/species/cryptococcus_neoformans_neoformans_B/cryptococcus_neoformans_neoformans_B_exon_probs.pbl
  845. augustus/config/species/cryptococcus_neoformans_neoformans_B/cryptococcus_neoformans_neoformans_B_igenic_probs.pbl
  846. augustus/config/species/cryptococcus_neoformans_neoformans_B/cryptococcus_neoformans_neoformans_B_intron_probs.pbl
  847. augustus/config/species/cryptococcus_neoformans_neoformans_B/cryptococcus_neoformans_neoformans_B_metapars.cfg
  848. augustus/config/species/cryptococcus_neoformans_neoformans_B/cryptococcus_neoformans_neoformans_B_parameters.cfg
  849. augustus/config/species/cryptococcus_neoformans_neoformans_B/cryptococcus_neoformans_neoformans_B_weightmatrix.txt
  850. augustus/config/species/cryptococcus_neoformans_neoformans_JEC21/cryptococcus_neoformans_neoformans_JEC21_exon_probs.pbl
  851. augustus/config/species/cryptococcus_neoformans_neoformans_JEC21/cryptococcus_neoformans_neoformans_JEC21_igenic_probs.pbl
  852. augustus/config/species/cryptococcus_neoformans_neoformans_JEC21/cryptococcus_neoformans_neoformans_JEC21_intron_probs.pbl
  853. augustus/config/species/cryptococcus_neoformans_neoformans_JEC21/cryptococcus_neoformans_neoformans_JEC21_metapars.cfg
  854. augustus/config/species/cryptococcus_neoformans_neoformans_JEC21/cryptococcus_neoformans_neoformans_JEC21_parameters.cfg
  855. augustus/config/species/cryptococcus_neoformans_neoformans_JEC21/cryptococcus_neoformans_neoformans_JEC21_weightmatrix.txt
  856. augustus/config/species/culex/culex_exon_probs.pbl
  857. augustus/config/species/culex/culex_exon_probs.pbl.wech
  858. augustus/config/species/culex/culex_igenic_probs.pbl
  859. augustus/config/species/culex/culex_igenic_probs.pbl.wech
  860. augustus/config/species/culex/culex_intron_probs.pbl
  861. augustus/config/species/culex/culex_intron_probs.pbl.wech
  862. augustus/config/species/culex/culex_metapars.cfg
  863. augustus/config/species/culex/culex_parameters.cfg
  864. augustus/config/species/culex/culex_parameters.old.cfg
  865. augustus/config/species/culex/culex_trans_shadow_partial_utr.pbl
  866. augustus/config/species/culex/culex_utr_probs.pbl
  867. augustus/config/species/culex/culex_weightmatrix.txt
  868. augustus/config/species/debaryomyces_hansenii/debaryomyces_hansenii_exon_probs.pbl
  869. augustus/config/species/debaryomyces_hansenii/debaryomyces_hansenii_igenic_probs.pbl
  870. augustus/config/species/debaryomyces_hansenii/debaryomyces_hansenii_intron_probs.pbl
  871. augustus/config/species/debaryomyces_hansenii/debaryomyces_hansenii_metapars.cfg
  872. augustus/config/species/debaryomyces_hansenii/debaryomyces_hansenii_parameters.cfg
  873. augustus/config/species/debaryomyces_hansenii/debaryomyces_hansenii_weightmatrix.txt
  874. augustus/config/species/elephant_shark/elephant_shark_exon_probs.pbl
  875. augustus/config/species/elephant_shark/elephant_shark_igenic_probs.pbl
  876. augustus/config/species/elephant_shark/elephant_shark_intron_probs.pbl
  877. augustus/config/species/elephant_shark/elephant_shark_metapars.cfg
  878. augustus/config/species/elephant_shark/elephant_shark_metapars.utr.cfg
  879. augustus/config/species/elephant_shark/elephant_shark_parameters.cfg
  880. augustus/config/species/elephant_shark/elephant_shark_weightmatrix.txt
  881. augustus/config/species/encephalitozoon_cuniculi_GB/encephalitozoon_cuniculi_GB_exon_probs.pbl
  882. augustus/config/species/encephalitozoon_cuniculi_GB/encephalitozoon_cuniculi_GB_igenic_probs.pbl
  883. augustus/config/species/encephalitozoon_cuniculi_GB/encephalitozoon_cuniculi_GB_intron_probs.pbl
  884. augustus/config/species/encephalitozoon_cuniculi_GB/encephalitozoon_cuniculi_GB_metapars.cfg
  885. augustus/config/species/encephalitozoon_cuniculi_GB/encephalitozoon_cuniculi_GB_parameters.cfg
  886. augustus/config/species/encephalitozoon_cuniculi_GB/encephalitozoon_cuniculi_GB_weightmatrix.txt
  887. augustus/config/species/eremothecium_gossypii/eremothecium_gossypii_exon_probs.pbl
  888. augustus/config/species/eremothecium_gossypii/eremothecium_gossypii_igenic_probs.pbl
  889. augustus/config/species/eremothecium_gossypii/eremothecium_gossypii_intron_probs.pbl
  890. augustus/config/species/eremothecium_gossypii/eremothecium_gossypii_metapars.cfg
  891. augustus/config/species/eremothecium_gossypii/eremothecium_gossypii_parameters.cfg
  892. augustus/config/species/eremothecium_gossypii/eremothecium_gossypii_weightmatrix.txt
  893. augustus/config/species/fly/fly_exon_probs.pbl
  894. augustus/config/species/fly/fly_igenic_probs.pbl
  895. augustus/config/species/fly/fly_intron_probs.pbl
  896. augustus/config/species/fly/fly_metapars.cfg
  897. augustus/config/species/fly/fly_metapars.utr.cfg
  898. augustus/config/species/fly/fly_parameters.cfg
  899. augustus/config/species/fly/fly_utr_probs.pbl
  900. augustus/config/species/fly/fly_weightmatrix.txt
  901. augustus/config/species/fly_exp/fly_exp_exon_probs.pbl
  902. augustus/config/species/fly_exp/fly_exp_igenic_probs.pbl
  903. augustus/config/species/fly_exp/fly_exp_intron_probs.pbl
  904. augustus/config/species/fly_exp/fly_exp_metapars.cfg
  905. augustus/config/species/fly_exp/fly_exp_metapars.utr.cfg
  906. augustus/config/species/fly_exp/fly_exp_parameters.cfg
  907. augustus/config/species/fly_exp/fly_exp_utr_probs.pbl
  908. augustus/config/species/fly_exp/fly_exp_weightmatrix.txt
  909. augustus/config/species/fusarium/fusarium_exon_probs.pbl
  910. augustus/config/species/fusarium/fusarium_igenic_probs.pbl
  911. augustus/config/species/fusarium/fusarium_intron_probs.pbl
  912. augustus/config/species/fusarium/fusarium_parameters.cfg
  913. augustus/config/species/fusarium/fusarium_weightmatrix.txt
  914. augustus/config/species/fusarium_graminearum/fusarium_graminearum_exon_probs.pbl
  915. augustus/config/species/fusarium_graminearum/fusarium_graminearum_igenic_probs.pbl
  916. augustus/config/species/fusarium_graminearum/fusarium_graminearum_intron_probs.pbl
  917. augustus/config/species/fusarium_graminearum/fusarium_graminearum_metapars.cfg
  918. augustus/config/species/fusarium_graminearum/fusarium_graminearum_parameters.cfg
  919. augustus/config/species/fusarium_graminearum/fusarium_graminearum_weightmatrix.txt
  920. augustus/config/species/galdieria/extrinsic.PE.cfg
  921. augustus/config/species/galdieria/galdieria_exon_probs.pbl
  922. augustus/config/species/galdieria/galdieria_igenic_probs.pbl
  923. augustus/config/species/galdieria/galdieria_intron_probs.pbl
  924. augustus/config/species/galdieria/galdieria_metapars.cfg
  925. augustus/config/species/galdieria/galdieria_parameters.cfg
  926. augustus/config/species/galdieria/galdieria_splicefile
  927. augustus/config/species/galdieria/galdieria_trans_shadow_partial_utr.pbl
  928. augustus/config/species/galdieria/galdieria_utr_probs.pbl
  929. augustus/config/species/galdieria/galdieria_weightmatrix.txt
  930. augustus/config/species/generic/generic_metapars.cfg
  931. augustus/config/species/generic/generic_metapars.cgp.cfg
  932. augustus/config/species/generic/generic_metapars.utr.cfg
  933. augustus/config/species/generic/generic_parameters.cfg
  934. augustus/config/species/generic/generic_weightmatrix.txt
  935. augustus/config/species/gigaspora_margarita/README.TXT
  936. augustus/config/species/gigaspora_margarita/gigaspora_margarita_exon_probs.pbl
  937. augustus/config/species/gigaspora_margarita/gigaspora_margarita_igenic_probs.pbl
  938. augustus/config/species/gigaspora_margarita/gigaspora_margarita_intron_probs.pbl
  939. augustus/config/species/gigaspora_margarita/gigaspora_margarita_metapars.cfg
  940. augustus/config/species/gigaspora_margarita/gigaspora_margarita_metapars.cgp.cfg
  941. augustus/config/species/gigaspora_margarita/gigaspora_margarita_metapars.utr.cfg
  942. augustus/config/species/gigaspora_margarita/gigaspora_margarita_parameters.cfg
  943. augustus/config/species/gigaspora_margarita/gigaspora_margarita_weightmatrix.txt
  944. augustus/config/species/gigaspora_margarita/gth.cfg
  945. augustus/config/species/heliconius_melpomene1/heliconius_melpomene1_exon_probs.pbl
  946. augustus/config/species/heliconius_melpomene1/heliconius_melpomene1_igenic_probs.pbl
  947. augustus/config/species/heliconius_melpomene1/heliconius_melpomene1_intron_probs.pbl
  948. augustus/config/species/heliconius_melpomene1/heliconius_melpomene1_metapars.cfg
  949. augustus/config/species/heliconius_melpomene1/heliconius_melpomene1_metapars.utr.cfg
  950. augustus/config/species/heliconius_melpomene1/heliconius_melpomene1_parameters.cfg
  951. augustus/config/species/heliconius_melpomene1/heliconius_melpomene1_weightmatrix.txt
  952. augustus/config/species/histoplasma/histoplasma_exon_probs.pbl
  953. augustus/config/species/histoplasma/histoplasma_igenic_probs.pbl
  954. augustus/config/species/histoplasma/histoplasma_intron_probs.pbl
  955. augustus/config/species/histoplasma/histoplasma_parameters.cfg
  956. augustus/config/species/histoplasma/histoplasma_weightmatrix.txt
  957. augustus/config/species/histoplasma_capsulatum/histoplasma_capsulatum_exon_probs.pbl
  958. augustus/config/species/histoplasma_capsulatum/histoplasma_capsulatum_igenic_probs.pbl
  959. augustus/config/species/histoplasma_capsulatum/histoplasma_capsulatum_intron_probs.pbl
  960. augustus/config/species/histoplasma_capsulatum/histoplasma_capsulatum_metapars.cfg
  961. augustus/config/species/histoplasma_capsulatum/histoplasma_capsulatum_parameters.cfg
  962. augustus/config/species/histoplasma_capsulatum/histoplasma_capsulatum_weightmatrix.txt
  963. augustus/config/species/honeybee1/honeybee1_exon_probs.pbl
  964. augustus/config/species/honeybee1/honeybee1_exon_probs.pbl.withoutCRF
  965. augustus/config/species/honeybee1/honeybee1_igenic_probs.pbl
  966. augustus/config/species/honeybee1/honeybee1_igenic_probs.pbl.withoutCRF
  967. augustus/config/species/honeybee1/honeybee1_intron_probs.pbl
  968. augustus/config/species/honeybee1/honeybee1_intron_probs.pbl.withoutCRF
  969. augustus/config/species/honeybee1/honeybee1_metapars.cfg
  970. augustus/config/species/honeybee1/honeybee1_metapars.utr.cfg
  971. augustus/config/species/honeybee1/honeybee1_parameters.cfg
  972. augustus/config/species/honeybee1/honeybee1_parameters.cfg.orig1
  973. augustus/config/species/honeybee1/honeybee1_utr_probs.pbl
  974. augustus/config/species/honeybee1/honeybee1_weightmatrix.txt
  975. augustus/config/species/human/README.TXT
  976. augustus/config/species/human/human_exon_probs.pbl
  977. augustus/config/species/human/human_igenic_probs.pbl
  978. augustus/config/species/human/human_intron_probs.pbl
  979. augustus/config/species/human/human_parameters.cfg
  980. augustus/config/species/human/human_trans_shadow_partial_utr.pbl
  981. augustus/config/species/human/human_utr_probs.pbl
  982. augustus/config/species/human/human_weightmatrix.txt
  983. augustus/config/species/hymenolepis_microstoma/hymenolepis_microstoma_exon_probs.pbl
  984. augustus/config/species/hymenolepis_microstoma/hymenolepis_microstoma_igenic_probs.pbl
  985. augustus/config/species/hymenolepis_microstoma/hymenolepis_microstoma_intron_probs.pbl
  986. augustus/config/species/hymenolepis_microstoma/hymenolepis_microstoma_metapars.cfg
  987. augustus/config/species/hymenolepis_microstoma/hymenolepis_microstoma_metapars.cgp.cfg
  988. augustus/config/species/hymenolepis_microstoma/hymenolepis_microstoma_metapars.utr.cfg
  989. augustus/config/species/hymenolepis_microstoma/hymenolepis_microstoma_parameters.cfg
  990. augustus/config/species/hymenolepis_microstoma/hymenolepis_microstoma_weightmatrix.txt
  991. augustus/config/species/hymenolepis_microstoma/make.doc
  992. augustus/config/species/japaneselamprey/japaneselamprey_exon_probs.pbl
  993. augustus/config/species/japaneselamprey/japaneselamprey_igenic_probs.pbl
  994. augustus/config/species/japaneselamprey/japaneselamprey_intron_probs.pbl
  995. augustus/config/species/japaneselamprey/japaneselamprey_metapars.cfg
  996. augustus/config/species/japaneselamprey/japaneselamprey_metapars.utr.cfg
  997. augustus/config/species/japaneselamprey/japaneselamprey_parameters.cfg
  998. augustus/config/species/japaneselamprey/japaneselamprey_weightmatrix.txt
  999. augustus/config/species/kluyveromyces_lactis/kluyveromyces_lactis_exon_probs.pbl
  1000. augustus/config/species/kluyveromyces_lactis/kluyveromyces_lactis_igenic_probs.pbl
  1001. augustus/config/species/kluyveromyces_lactis/kluyveromyces_lactis_intron_probs.pbl
  1002. augustus/config/species/kluyveromyces_lactis/kluyveromyces_lactis_metapars.cfg
  1003. augustus/config/species/kluyveromyces_lactis/kluyveromyces_lactis_parameters.cfg
  1004. augustus/config/species/kluyveromyces_lactis/kluyveromyces_lactis_weightmatrix.txt
  1005. augustus/config/species/laccaria_bicolor/laccaria_bicolor_exon_probs.pbl
  1006. augustus/config/species/laccaria_bicolor/laccaria_bicolor_igenic_probs.pbl
  1007. augustus/config/species/laccaria_bicolor/laccaria_bicolor_intron_probs.pbl
  1008. augustus/config/species/laccaria_bicolor/laccaria_bicolor_metapars.cfg
  1009. augustus/config/species/laccaria_bicolor/laccaria_bicolor_parameters.cfg
  1010. augustus/config/species/laccaria_bicolor/laccaria_bicolor_weightmatrix.txt
  1011. augustus/config/species/leishmania_tarentolae/leishmania_tarentolae_exon_probs.pbl
  1012. augustus/config/species/leishmania_tarentolae/leishmania_tarentolae_igenic_probs.pbl
  1013. augustus/config/species/leishmania_tarentolae/leishmania_tarentolae_metapars.cfg
  1014. augustus/config/species/leishmania_tarentolae/leishmania_tarentolae_metapars.utr.cfg
  1015. augustus/config/species/leishmania_tarentolae/leishmania_tarentolae_parameters.cfg
  1016. augustus/config/species/leishmania_tarentolae/leishmania_tarentolae_weightmatrix.txt
  1017. augustus/config/species/lodderomyces_elongisporus/lodderomyces_elongisporus_exon_probs.pbl
  1018. augustus/config/species/lodderomyces_elongisporus/lodderomyces_elongisporus_igenic_probs.pbl
  1019. augustus/config/species/lodderomyces_elongisporus/lodderomyces_elongisporus_intron_probs.pbl
  1020. augustus/config/species/lodderomyces_elongisporus/lodderomyces_elongisporus_metapars.cfg
  1021. augustus/config/species/lodderomyces_elongisporus/lodderomyces_elongisporus_parameters.cfg
  1022. augustus/config/species/lodderomyces_elongisporus/lodderomyces_elongisporus_weightmatrix.txt
  1023. augustus/config/species/magnaporthe_grisea/magnaporthe_grisea_exon_probs.pbl
  1024. augustus/config/species/magnaporthe_grisea/magnaporthe_grisea_igenic_probs.pbl
  1025. augustus/config/species/magnaporthe_grisea/magnaporthe_grisea_intron_probs.pbl
  1026. augustus/config/species/magnaporthe_grisea/magnaporthe_grisea_metapars.cfg
  1027. augustus/config/species/magnaporthe_grisea/magnaporthe_grisea_parameters.cfg
  1028. augustus/config/species/magnaporthe_grisea/magnaporthe_grisea_weightmatrix.txt
  1029. augustus/config/species/maize/maize_exon_probs.pbl
  1030. augustus/config/species/maize/maize_igenic_probs.pbl
  1031. augustus/config/species/maize/maize_intron_probs.pbl
  1032. augustus/config/species/maize/maize_metapars.cfg
  1033. augustus/config/species/maize/maize_parameters.cfg
  1034. augustus/config/species/maize/maize_splicefile.txt.gz
  1035. augustus/config/species/maize/maize_weightmatrix.txt
  1036. augustus/config/species/maize5/maize5_exon_probs.pbl
  1037. augustus/config/species/maize5/maize5_igenic_probs.pbl
  1038. augustus/config/species/maize5/maize5_intron_probs.pbl
  1039. augustus/config/species/maize5/maize5_metapars.cfg
  1040. augustus/config/species/maize5/maize5_metapars.utr.cfg
  1041. augustus/config/species/maize5/maize5_parameters.cfg
  1042. augustus/config/species/maize5/maize5_utr_probs.pbl
  1043. augustus/config/species/maize5/maize5_weightmatrix.txt
  1044. augustus/config/species/mnemiopsis_leidyi/README.TXT
  1045. augustus/config/species/mnemiopsis_leidyi/mnemiopsis_leidyi_exon_probs.pbl
  1046. augustus/config/species/mnemiopsis_leidyi/mnemiopsis_leidyi_igenic_probs.pbl
  1047. augustus/config/species/mnemiopsis_leidyi/mnemiopsis_leidyi_intron_probs.pbl
  1048. augustus/config/species/mnemiopsis_leidyi/mnemiopsis_leidyi_metapars.cfg
  1049. augustus/config/species/mnemiopsis_leidyi/mnemiopsis_leidyi_metapars.cgp.cfg
  1050. augustus/config/species/mnemiopsis_leidyi/mnemiopsis_leidyi_metapars.utr.cfg
  1051. augustus/config/species/mnemiopsis_leidyi/mnemiopsis_leidyi_parameters.cfg
  1052. augustus/config/species/mnemiopsis_leidyi/mnemiopsis_leidyi_parameters.cgp.cfg
  1053. augustus/config/species/mnemiopsis_leidyi/mnemiopsis_leidyi_utr_probs.pbl
  1054. augustus/config/species/mnemiopsis_leidyi/mnemiopsis_leidyi_weightmatrix.txt
  1055. augustus/config/species/nasonia/nasonia_exon_probs.pbl
  1056. augustus/config/species/nasonia/nasonia_igenic_probs.pbl
  1057. augustus/config/species/nasonia/nasonia_intron_probs.pbl
  1058. augustus/config/species/nasonia/nasonia_metapars.cfg
  1059. augustus/config/species/nasonia/nasonia_parameters.cfg
  1060. augustus/config/species/nasonia/nasonia_weightmatrix.txt
  1061. augustus/config/species/nematostella_vectensis/README.TXT
  1062. augustus/config/species/nematostella_vectensis/nematostella_vectensis_exon_probs.pbl
  1063. augustus/config/species/nematostella_vectensis/nematostella_vectensis_igenic_probs.pbl
  1064. augustus/config/species/nematostella_vectensis/nematostella_vectensis_intron_probs.pbl
  1065. augustus/config/species/nematostella_vectensis/nematostella_vectensis_parameters.cfg
  1066. augustus/config/species/nematostella_vectensis/nematostella_vectensis_weightmatrix.txt
  1067. augustus/config/species/neurospora/neurospora_exon_probs.pbl
  1068. augustus/config/species/neurospora/neurospora_igenic_probs.pbl
  1069. augustus/config/species/neurospora/neurospora_intron_probs.pbl
  1070. augustus/config/species/neurospora/neurospora_parameters.cfg
  1071. augustus/config/species/neurospora/neurospora_weightmatrix.txt
  1072. augustus/config/species/neurospora_crassa/neurospora_crassa_exon_probs.pbl
  1073. augustus/config/species/neurospora_crassa/neurospora_crassa_igenic_probs.pbl
  1074. augustus/config/species/neurospora_crassa/neurospora_crassa_intron_probs.pbl
  1075. augustus/config/species/neurospora_crassa/neurospora_crassa_metapars.cfg
  1076. augustus/config/species/neurospora_crassa/neurospora_crassa_parameters.cfg
  1077. augustus/config/species/neurospora_crassa/neurospora_crassa_weightmatrix.txt
  1078. augustus/config/species/parasteatoda/parasteatoda_exon_probs.pbl
  1079. augustus/config/species/parasteatoda/parasteatoda_igenic_probs.pbl
  1080. augustus/config/species/parasteatoda/parasteatoda_intron_probs.pbl
  1081. augustus/config/species/parasteatoda/parasteatoda_parameters.cfg
  1082. augustus/config/species/parasteatoda/parasteatoda_utr_probs.pbl
  1083. augustus/config/species/parasteatoda/parasteatoda_weightmatrix.txt
  1084. augustus/config/species/pchrysosporium/pchrysosporium_exon_probs.pbl
  1085. augustus/config/species/pchrysosporium/pchrysosporium_igenic_probs.pbl
  1086. augustus/config/species/pchrysosporium/pchrysosporium_intron_probs.pbl
  1087. augustus/config/species/pchrysosporium/pchrysosporium_parameters.cfg
  1088. augustus/config/species/pchrysosporium/pchrysosporium_weightmatrix.txt
  1089. augustus/config/species/pea_aphid/pea_aphid_exon_probs.pbl
  1090. augustus/config/species/pea_aphid/pea_aphid_igenic_probs.pbl
  1091. augustus/config/species/pea_aphid/pea_aphid_intron_probs.pbl
  1092. augustus/config/species/pea_aphid/pea_aphid_metapars.cfg
  1093. augustus/config/species/pea_aphid/pea_aphid_parameters.cfg
  1094. augustus/config/species/pea_aphid/pea_aphid_trans_shadow_partial_utr.pbl
  1095. augustus/config/species/pea_aphid/pea_aphid_utr_probs.pbl
  1096. augustus/config/species/pea_aphid/pea_aphid_weightmatrix.txt
  1097. augustus/config/species/pfalciparum/pfalciparum_exon_probs.pbl
  1098. augustus/config/species/pfalciparum/pfalciparum_igenic_probs.pbl
  1099. augustus/config/species/pfalciparum/pfalciparum_intron_probs.pbl
  1100. augustus/config/species/pfalciparum/pfalciparum_metapars.cfg
  1101. augustus/config/species/pfalciparum/pfalciparum_parameters.cfg
  1102. augustus/config/species/pfalciparum/pfalciparum_trans_shadow_partial.pbl
  1103. augustus/config/species/pfalciparum/pfalciparum_weightmatrix.txt
  1104. augustus/config/species/phanerochaete_chrysosporium/phanerochaete_chrysosporium_exon_probs.pbl
  1105. augustus/config/species/phanerochaete_chrysosporium/phanerochaete_chrysosporium_igenic_probs.pbl
  1106. augustus/config/species/phanerochaete_chrysosporium/phanerochaete_chrysosporium_intron_probs.pbl
  1107. augustus/config/species/phanerochaete_chrysosporium/phanerochaete_chrysosporium_metapars.cfg
  1108. augustus/config/species/phanerochaete_chrysosporium/phanerochaete_chrysosporium_parameters.cfg
  1109. augustus/config/species/phanerochaete_chrysosporium/phanerochaete_chrysosporium_weightmatrix.txt
  1110. augustus/config/species/pichia_stipitis/pichia_stipitis_exon_probs.pbl
  1111. augustus/config/species/pichia_stipitis/pichia_stipitis_igenic_probs.pbl
  1112. augustus/config/species/pichia_stipitis/pichia_stipitis_intron_probs.pbl
  1113. augustus/config/species/pichia_stipitis/pichia_stipitis_metapars.cfg
  1114. augustus/config/species/pichia_stipitis/pichia_stipitis_parameters.cfg
  1115. augustus/config/species/pichia_stipitis/pichia_stipitis_weightmatrix.txt
  1116. augustus/config/species/pisaster/extrinsic.pisaster.cfg
  1117. augustus/config/species/pisaster/pisaster_exon_probs.pbl
  1118. augustus/config/species/pisaster/pisaster_igenic_probs.pbl
  1119. augustus/config/species/pisaster/pisaster_intron_probs.pbl
  1120. augustus/config/species/pisaster/pisaster_metapars.cfg
  1121. augustus/config/species/pisaster/pisaster_metapars.cgp.cfg
  1122. augustus/config/species/pisaster/pisaster_metapars.utr.cfg
  1123. augustus/config/species/pisaster/pisaster_parameters.cfg
  1124. augustus/config/species/pisaster/pisaster_weightmatrix.txt
  1125. augustus/config/species/pneumocystis/README.TXT
  1126. augustus/config/species/pneumocystis/pneumocystis_exon_probs.pbl
  1127. augustus/config/species/pneumocystis/pneumocystis_igenic_probs.pbl
  1128. augustus/config/species/pneumocystis/pneumocystis_intron_probs.pbl
  1129. augustus/config/species/pneumocystis/pneumocystis_metapars.cfg
  1130. augustus/config/species/pneumocystis/pneumocystis_metaparsBAK.cfg
  1131. augustus/config/species/pneumocystis/pneumocystis_parameters.cfg
  1132. augustus/config/species/pneumocystis/pneumocystis_weightmatrix.txt
  1133. augustus/config/species/rhincodon/rhincodon_exon_probs.pbl
  1134. augustus/config/species/rhincodon/rhincodon_igenic_probs.pbl
  1135. augustus/config/species/rhincodon/rhincodon_intron_probs.pbl
  1136. augustus/config/species/rhincodon/rhincodon_metapars.cfg
  1137. augustus/config/species/rhincodon/rhincodon_metapars.cgp.cfg
  1138. augustus/config/species/rhincodon/rhincodon_metapars.utr.cfg
  1139. augustus/config/species/rhincodon/rhincodon_parameters.cfg
  1140. augustus/config/species/rhincodon/rhincodon_parameters.cfg.orig1
  1141. augustus/config/species/rhincodon/rhincodon_weightmatrix.txt
  1142. augustus/config/species/rhizopus_oryzae/rhizopus_oryzae_exon_probs.pbl
  1143. augustus/config/species/rhizopus_oryzae/rhizopus_oryzae_igenic_probs.pbl
  1144. augustus/config/species/rhizopus_oryzae/rhizopus_oryzae_intron_probs.pbl
  1145. augustus/config/species/rhizopus_oryzae/rhizopus_oryzae_metapars.cfg
  1146. augustus/config/species/rhizopus_oryzae/rhizopus_oryzae_parameters.cfg
  1147. augustus/config/species/rhizopus_oryzae/rhizopus_oryzae_weightmatrix.txt
  1148. augustus/config/species/rhodnius/rhodnius_exon_probs.pbl
  1149. augustus/config/species/rhodnius/rhodnius_igenic_probs.pbl
  1150. augustus/config/species/rhodnius/rhodnius_intron_probs.pbl
  1151. augustus/config/species/rhodnius/rhodnius_metapars.cfg
  1152. augustus/config/species/rhodnius/rhodnius_metapars.utr.cfg
  1153. augustus/config/species/rhodnius/rhodnius_parameters.cfg
  1154. augustus/config/species/rhodnius/rhodnius_utr_probs.pbl
  1155. augustus/config/species/rhodnius/rhodnius_weightmatrix.txt
  1156. augustus/config/species/rice/README.TXT
  1157. augustus/config/species/rice/rice_exon_probs.pbl
  1158. augustus/config/species/rice/rice_igenic_probs.pbl
  1159. augustus/config/species/rice/rice_intron_probs.pbl
  1160. augustus/config/species/rice/rice_metapars.cfg
  1161. augustus/config/species/rice/rice_metapars.utr.cfg
  1162. augustus/config/species/rice/rice_parameters.cfg
  1163. augustus/config/species/rice/rice_utr_probs.pbl
  1164. augustus/config/species/rice/rice_weightmatrix.txt
  1165. augustus/config/species/s_aureus/README.TXT
  1166. augustus/config/species/s_aureus/s_aureus_exon_probs.pbl
  1167. augustus/config/species/s_aureus/s_aureus_igenic_probs.pbl
  1168. augustus/config/species/s_aureus/s_aureus_metapars.cfg
  1169. augustus/config/species/s_aureus/s_aureus_metapars.utr.cfg
  1170. augustus/config/species/s_aureus/s_aureus_ovlp_len.pbl
  1171. augustus/config/species/s_aureus/s_aureus_parameters.cfg
  1172. augustus/config/species/s_aureus/s_aureus_parameters.cgp.cfg
  1173. augustus/config/species/s_aureus/s_aureus_trans_shadow_bacterium.pbl
  1174. augustus/config/species/s_aureus/s_aureus_weightmatrix.txt
  1175. augustus/config/species/s_pneumoniae/s_pneumoniae_exon_probs.pbl
  1176. augustus/config/species/s_pneumoniae/s_pneumoniae_igenic_probs.pbl
  1177. augustus/config/species/s_pneumoniae/s_pneumoniae_metapars.cfg
  1178. augustus/config/species/s_pneumoniae/s_pneumoniae_metapars.utr.cfg
  1179. augustus/config/species/s_pneumoniae/s_pneumoniae_ovlp_len.pbl
  1180. augustus/config/species/s_pneumoniae/s_pneumoniae_parameters.cfg
  1181. augustus/config/species/s_pneumoniae/s_pneumoniae_parameters.cfg.orig1
  1182. augustus/config/species/s_pneumoniae/s_pneumoniae_parameters.cfg.orig2
  1183. augustus/config/species/s_pneumoniae/s_pneumoniae_parameters.cfg.orig3
  1184. augustus/config/species/s_pneumoniae/s_pneumoniae_parameters.cfg.orig4
  1185. augustus/config/species/s_pneumoniae/s_pneumoniae_trans_shadow_bacterium.pbl
  1186. augustus/config/species/s_pneumoniae/s_pneumoniae_weightmatrix.txt
  1187. augustus/config/species/saccharomyces/saccharomyces_exon_probs.pbl
  1188. augustus/config/species/saccharomyces/saccharomyces_igenic_probs.pbl
  1189. augustus/config/species/saccharomyces/saccharomyces_intron_probs.pbl
  1190. augustus/config/species/saccharomyces/saccharomyces_parameters.cfg
  1191. augustus/config/species/saccharomyces/saccharomyces_weightmatrix.txt
  1192. augustus/config/species/saccharomyces_cerevisiae_S288C/saccharomyces_cerevisiae_S288C_exon_probs.pbl
  1193. augustus/config/species/saccharomyces_cerevisiae_S288C/saccharomyces_cerevisiae_S288C_igenic_probs.pbl
  1194. augustus/config/species/saccharomyces_cerevisiae_S288C/saccharomyces_cerevisiae_S288C_intron_probs.pbl
  1195. augustus/config/species/saccharomyces_cerevisiae_S288C/saccharomyces_cerevisiae_S288C_metapars.cfg
  1196. augustus/config/species/saccharomyces_cerevisiae_S288C/saccharomyces_cerevisiae_S288C_parameters.cfg
  1197. augustus/config/species/saccharomyces_cerevisiae_S288C/saccharomyces_cerevisiae_S288C_weightmatrix.txt
  1198. augustus/config/species/saccharomyces_cerevisiae_rm11-1a_1/saccharomyces_cerevisiae_rm11-1a_1_exon_probs.pbl
  1199. augustus/config/species/saccharomyces_cerevisiae_rm11-1a_1/saccharomyces_cerevisiae_rm11-1a_1_igenic_probs.pbl
  1200. augustus/config/species/saccharomyces_cerevisiae_rm11-1a_1/saccharomyces_cerevisiae_rm11-1a_1_intron_probs.pbl
  1201. augustus/config/species/saccharomyces_cerevisiae_rm11-1a_1/saccharomyces_cerevisiae_rm11-1a_1_metapars.cfg
  1202. augustus/config/species/saccharomyces_cerevisiae_rm11-1a_1/saccharomyces_cerevisiae_rm11-1a_1_parameters.cfg
  1203. augustus/config/species/saccharomyces_cerevisiae_rm11-1a_1/saccharomyces_cerevisiae_rm11-1a_1_weightmatrix.txt
  1204. augustus/config/species/schistosoma/schistosoma_exon_probs.pbl
  1205. augustus/config/species/schistosoma/schistosoma_igenic_probs.pbl
  1206. augustus/config/species/schistosoma/schistosoma_intron_probs.pbl
  1207. augustus/config/species/schistosoma/schistosoma_metapars.cfg
  1208. augustus/config/species/schistosoma/schistosoma_parameters.cfg
  1209. augustus/config/species/schistosoma/schistosoma_parameters.cfg.opt
  1210. augustus/config/species/schistosoma/schistosoma_splicefile.txt
  1211. augustus/config/species/schistosoma/schistosoma_weightmatrix.txt
  1212. augustus/config/species/schistosoma2/README.TXT
  1213. augustus/config/species/schistosoma2/schistosoma2_exon_probs.pbl
  1214. augustus/config/species/schistosoma2/schistosoma2_igenic_probs.pbl
  1215. augustus/config/species/schistosoma2/schistosoma2_intron_probs.pbl
  1216. augustus/config/species/schistosoma2/schistosoma2_metapars.cfg
  1217. augustus/config/species/schistosoma2/schistosoma2_metapars.cgp.cfg
  1218. augustus/config/species/schistosoma2/schistosoma2_metapars.utr.cfg
  1219. augustus/config/species/schistosoma2/schistosoma2_parameters.cfg
  1220. augustus/config/species/schistosoma2/schistosoma2_utr_probs.pbl
  1221. augustus/config/species/schistosoma2/schistosoma2_weightmatrix.txt
  1222. augustus/config/species/schizosaccharomyces_pombe/schizosaccharomyces_pombe_exon_probs.pbl
  1223. augustus/config/species/schizosaccharomyces_pombe/schizosaccharomyces_pombe_igenic_probs.pbl
  1224. augustus/config/species/schizosaccharomyces_pombe/schizosaccharomyces_pombe_intron_probs.pbl
  1225. augustus/config/species/schizosaccharomyces_pombe/schizosaccharomyces_pombe_metapars.cfg
  1226. augustus/config/species/schizosaccharomyces_pombe/schizosaccharomyces_pombe_parameters.cfg
  1227. augustus/config/species/schizosaccharomyces_pombe/schizosaccharomyces_pombe_weightmatrix.txt
  1228. augustus/config/species/scyliorhinus/scyliorhinus_exon_probs.pbl
  1229. augustus/config/species/scyliorhinus/scyliorhinus_igenic_probs.pbl
  1230. augustus/config/species/scyliorhinus/scyliorhinus_intron_probs.pbl
  1231. augustus/config/species/scyliorhinus/scyliorhinus_metapars.cfg
  1232. augustus/config/species/scyliorhinus/scyliorhinus_metapars.cgp.cfg
  1233. augustus/config/species/scyliorhinus/scyliorhinus_metapars.utr.cfg
  1234. augustus/config/species/scyliorhinus/scyliorhinus_parameters.cfg
  1235. augustus/config/species/scyliorhinus/scyliorhinus_parameters.cfg.orig1
  1236. augustus/config/species/scyliorhinus/scyliorhinus_weightmatrix.txt
  1237. augustus/config/species/sealamprey/sealamprey_exon_probs.pbl
  1238. augustus/config/species/sealamprey/sealamprey_igenic_probs.pbl
  1239. augustus/config/species/sealamprey/sealamprey_intron_probs.pbl
  1240. augustus/config/species/sealamprey/sealamprey_metapars.cfg
  1241. augustus/config/species/sealamprey/sealamprey_parameters.cfg
  1242. augustus/config/species/sealamprey/sealamprey_weightmatrix.txt
  1243. augustus/config/species/strongylocentrotus_purpuratus/README.TXT
  1244. augustus/config/species/strongylocentrotus_purpuratus/strongylocentrotus_purpuratus_exon_probs.pbl
  1245. augustus/config/species/strongylocentrotus_purpuratus/strongylocentrotus_purpuratus_igenic_probs.pbl
  1246. augustus/config/species/strongylocentrotus_purpuratus/strongylocentrotus_purpuratus_intron_probs.pbl
  1247. augustus/config/species/strongylocentrotus_purpuratus/strongylocentrotus_purpuratus_metapars.cfg
  1248. augustus/config/species/strongylocentrotus_purpuratus/strongylocentrotus_purpuratus_metapars.cgp.cfg
  1249. augustus/config/species/strongylocentrotus_purpuratus/strongylocentrotus_purpuratus_metapars.utr.cfg
  1250. augustus/config/species/strongylocentrotus_purpuratus/strongylocentrotus_purpuratus_parameters.cfg
  1251. augustus/config/species/strongylocentrotus_purpuratus/strongylocentrotus_purpuratus_parameters.cgp.cfg
  1252. augustus/config/species/strongylocentrotus_purpuratus/strongylocentrotus_purpuratus_utr_probs.pbl
  1253. augustus/config/species/strongylocentrotus_purpuratus/strongylocentrotus_purpuratus_weightmatrix.txt
  1254. augustus/config/species/sulfolobus_solfataricus/sulfolobus_solfataricus_exon_probs.pbl
  1255. augustus/config/species/sulfolobus_solfataricus/sulfolobus_solfataricus_igenic_probs.pbl
  1256. augustus/config/species/sulfolobus_solfataricus/sulfolobus_solfataricus_metapars.cfg
  1257. augustus/config/species/sulfolobus_solfataricus/sulfolobus_solfataricus_metapars.utr.cfg
  1258. augustus/config/species/sulfolobus_solfataricus/sulfolobus_solfataricus_ovlp_len.pbl
  1259. augustus/config/species/sulfolobus_solfataricus/sulfolobus_solfataricus_parameters.cfg
  1260. augustus/config/species/sulfolobus_solfataricus/sulfolobus_solfataricus_trans_shadow_bacterium.pbl
  1261. augustus/config/species/sulfolobus_solfataricus/sulfolobus_solfataricus_weightmatrix.txt
  1262. augustus/config/species/sunflower/README.TXT
  1263. augustus/config/species/sunflower/sunflower_exon_probs.pbl
  1264. augustus/config/species/sunflower/sunflower_igenic_probs.pbl
  1265. augustus/config/species/sunflower/sunflower_intron_probs.pbl
  1266. augustus/config/species/sunflower/sunflower_metapars.cfg
  1267. augustus/config/species/sunflower/sunflower_metapars.cgp.cfg
  1268. augustus/config/species/sunflower/sunflower_metapars.utr.cfg
  1269. augustus/config/species/sunflower/sunflower_parameters.cfg
  1270. augustus/config/species/sunflower/sunflower_weightmatrix.txt
  1271. augustus/config/species/template_prokaryotic/template_prokaryotic_metapars.cfg
  1272. augustus/config/species/template_prokaryotic/template_prokaryotic_metapars.utr.cfg
  1273. augustus/config/species/template_prokaryotic/template_prokaryotic_ovlp_len.pbl
  1274. augustus/config/species/template_prokaryotic/template_prokaryotic_parameters.cfg
  1275. augustus/config/species/template_prokaryotic/template_prokaryotic_trans_shadow_bacterium.pbl
  1276. augustus/config/species/template_prokaryotic/template_prokaryotic_weightmatrix.txt
  1277. augustus/config/species/tetrahymena/tetrahymena_exon_probs.pbl
  1278. augustus/config/species/tetrahymena/tetrahymena_igenic_probs.pbl
  1279. augustus/config/species/tetrahymena/tetrahymena_intron_probs.pbl
  1280. augustus/config/species/tetrahymena/tetrahymena_metapars.cfg
  1281. augustus/config/species/tetrahymena/tetrahymena_parameters.cfg
  1282. augustus/config/species/tetrahymena/tetrahymena_weightmatrix.txt
  1283. augustus/config/species/thermoanaerobacter_tengcongensis/thermoanaerobacter_tengcongensis_exon_probs.pbl
  1284. augustus/config/species/thermoanaerobacter_tengcongensis/thermoanaerobacter_tengcongensis_igenic_probs.pbl
  1285. augustus/config/species/thermoanaerobacter_tengcongensis/thermoanaerobacter_tengcongensis_metapars.cfg
  1286. augustus/config/species/thermoanaerobacter_tengcongensis/thermoanaerobacter_tengcongensis_metapars.utr.cfg
  1287. augustus/config/species/thermoanaerobacter_tengcongensis/thermoanaerobacter_tengcongensis_ovlp_len.pbl
  1288. augustus/config/species/thermoanaerobacter_tengcongensis/thermoanaerobacter_tengcongensis_parameters.cfg
  1289. augustus/config/species/thermoanaerobacter_tengcongensis/thermoanaerobacter_tengcongensis_trans_shadow_bacterium.pbl
  1290. augustus/config/species/thermoanaerobacter_tengcongensis/thermoanaerobacter_tengcongensis_weightmatrix.txt
  1291. augustus/config/species/tomato/tomato_exon_probs.pbl
  1292. augustus/config/species/tomato/tomato_igenic_probs.pbl
  1293. augustus/config/species/tomato/tomato_intron_probs.pbl
  1294. augustus/config/species/tomato/tomato_metapars.cfg
  1295. augustus/config/species/tomato/tomato_metapars.utr.cfg
  1296. augustus/config/species/tomato/tomato_parameters.cfg
  1297. augustus/config/species/tomato/tomato_utr_probs.pbl
  1298. augustus/config/species/tomato/tomato_weightmatrix.txt
  1299. augustus/config/species/toxoplasma/toxoplasma_exon_probs.pbl
  1300. augustus/config/species/toxoplasma/toxoplasma_igenic_probs.pbl
  1301. augustus/config/species/toxoplasma/toxoplasma_intron_probs.pbl
  1302. augustus/config/species/toxoplasma/toxoplasma_metaparameters.cfg
  1303. augustus/config/species/toxoplasma/toxoplasma_parameters.cfg
  1304. augustus/config/species/toxoplasma/toxoplasma_trans_shadow_partial_utr.pbl
  1305. augustus/config/species/toxoplasma/toxoplasma_utr_probs.pbl
  1306. augustus/config/species/toxoplasma/toxoplasma_weightmatrix.txt
  1307. augustus/config/species/tribolium2012/tribolium2012_exon_probs.pbl
  1308. augustus/config/species/tribolium2012/tribolium2012_exon_probs.pbl.HMM
  1309. augustus/config/species/tribolium2012/tribolium2012_exon_probs.pbl1
  1310. augustus/config/species/tribolium2012/tribolium2012_exon_probs.pbl2
  1311. augustus/config/species/tribolium2012/tribolium2012_exon_probs.pbl3
  1312. augustus/config/species/tribolium2012/tribolium2012_exon_probs.pbl4
  1313. augustus/config/species/tribolium2012/tribolium2012_igenic_probs.pbl
  1314. augustus/config/species/tribolium2012/tribolium2012_igenic_probs.pbl.HMM
  1315. augustus/config/species/tribolium2012/tribolium2012_igenic_probs.pbl1
  1316. augustus/config/species/tribolium2012/tribolium2012_igenic_probs.pbl2
  1317. augustus/config/species/tribolium2012/tribolium2012_igenic_probs.pbl3
  1318. augustus/config/species/tribolium2012/tribolium2012_igenic_probs.pbl4
  1319. augustus/config/species/tribolium2012/tribolium2012_intron_probs.pbl
  1320. augustus/config/species/tribolium2012/tribolium2012_intron_probs.pbl.HMM
  1321. augustus/config/species/tribolium2012/tribolium2012_intron_probs.pbl1
  1322. augustus/config/species/tribolium2012/tribolium2012_intron_probs.pbl2
  1323. augustus/config/species/tribolium2012/tribolium2012_intron_probs.pbl3
  1324. augustus/config/species/tribolium2012/tribolium2012_intron_probs.pbl4
  1325. augustus/config/species/tribolium2012/tribolium2012_metapars.cfg
  1326. augustus/config/species/tribolium2012/tribolium2012_metapars.utr.cfg
  1327. augustus/config/species/tribolium2012/tribolium2012_parameters.cfg
  1328. augustus/config/species/tribolium2012/tribolium2012_parameters.cfg.orig1
  1329. augustus/config/species/tribolium2012/tribolium2012_parameters.cfg.orig2
  1330. augustus/config/species/tribolium2012/tribolium2012_parameters.cfg.orig3
  1331. augustus/config/species/tribolium2012/tribolium2012_parameters.cfg.orig4
  1332. augustus/config/species/tribolium2012/tribolium2012_parameters.cfg.orig5
  1333. augustus/config/species/tribolium2012/tribolium2012_parameters.cfg.orig6
  1334. augustus/config/species/tribolium2012/tribolium2012_parameters.cfg.orig7
  1335. augustus/config/species/tribolium2012/tribolium2012_trans_shadow_partial_utr.pbl
  1336. augustus/config/species/tribolium2012/tribolium2012_utr_probs.pbl
  1337. augustus/config/species/tribolium2012/tribolium2012_utr_probs.pbl.HMM
  1338. augustus/config/species/tribolium2012/tribolium2012_weightmatrix.txt
  1339. augustus/config/species/trichinella/trichinella_exon_probs.pbl
  1340. augustus/config/species/trichinella/trichinella_igenic_probs.pbl
  1341. augustus/config/species/trichinella/trichinella_intron_probs.pbl
  1342. augustus/config/species/trichinella/trichinella_metapars.cfg
  1343. augustus/config/species/trichinella/trichinella_metapars.utr.cfg
  1344. augustus/config/species/trichinella/trichinella_parameters.cfg
  1345. augustus/config/species/trichinella/trichinella_utr_probs.pbl
  1346. augustus/config/species/trichinella/trichinella_weightmatrix.txt
  1347. augustus/config/species/ustilago/ustilago_exon_probs.pbl
  1348. augustus/config/species/ustilago/ustilago_igenic_probs.pbl
  1349. augustus/config/species/ustilago/ustilago_intron_probs.pbl
  1350. augustus/config/species/ustilago/ustilago_parameters.cfg
  1351. augustus/config/species/ustilago/ustilago_weightmatrix.txt
  1352. augustus/config/species/ustilago_maydis/ustilago_maydis_exon_probs.pbl
  1353. augustus/config/species/ustilago_maydis/ustilago_maydis_igenic_probs.pbl
  1354. augustus/config/species/ustilago_maydis/ustilago_maydis_intron_probs.pbl
  1355. augustus/config/species/ustilago_maydis/ustilago_maydis_metapars.cfg
  1356. augustus/config/species/ustilago_maydis/ustilago_maydis_parameters.cfg
  1357. augustus/config/species/ustilago_maydis/ustilago_maydis_weightmatrix.txt
  1358. augustus/config/species/verticillium_albo_atrum1/verticillium_albo_atrum1_exon_probs.pbl
  1359. augustus/config/species/verticillium_albo_atrum1/verticillium_albo_atrum1_igenic_probs.pbl
  1360. augustus/config/species/verticillium_albo_atrum1/verticillium_albo_atrum1_intron_probs.pbl
  1361. augustus/config/species/verticillium_albo_atrum1/verticillium_albo_atrum1_metapars.cfg
  1362. augustus/config/species/verticillium_albo_atrum1/verticillium_albo_atrum1_metapars.utr.cfg
  1363. augustus/config/species/verticillium_albo_atrum1/verticillium_albo_atrum1_parameters.cfg
  1364. augustus/config/species/verticillium_albo_atrum1/verticillium_albo_atrum1_utr_probs.pbl
  1365. augustus/config/species/verticillium_albo_atrum1/verticillium_albo_atrum1_weightmatrix.txt
  1366. augustus/config/species/verticillium_longisporum1/verticillium_longisporum1_exon_probs.pbl
  1367. augustus/config/species/verticillium_longisporum1/verticillium_longisporum1_igenic_probs.pbl
  1368. augustus/config/species/verticillium_longisporum1/verticillium_longisporum1_intron_probs.pbl
  1369. augustus/config/species/verticillium_longisporum1/verticillium_longisporum1_metapars.cfg
  1370. augustus/config/species/verticillium_longisporum1/verticillium_longisporum1_metapars.utr.cfg
  1371. augustus/config/species/verticillium_longisporum1/verticillium_longisporum1_parameters.cfg
  1372. augustus/config/species/verticillium_longisporum1/verticillium_longisporum1_parameters.cfg.orig1
  1373. augustus/config/species/verticillium_longisporum1/verticillium_longisporum1_utr_probs.pbl
  1374. augustus/config/species/verticillium_longisporum1/verticillium_longisporum1_weightmatrix.txt
  1375. augustus/config/species/volvox/volvox_exon_probs.pbl
  1376. augustus/config/species/volvox/volvox_igenic_probs.pbl
  1377. augustus/config/species/volvox/volvox_intron_probs.pbl
  1378. augustus/config/species/volvox/volvox_metapars.cfg
  1379. augustus/config/species/volvox/volvox_metapars.cgp.cfg
  1380. augustus/config/species/volvox/volvox_metapars.utr.cfg
  1381. augustus/config/species/volvox/volvox_parameters.cfg
  1382. augustus/config/species/volvox/volvox_utr_probs.pbl
  1383. augustus/config/species/volvox/volvox_weightmatrix.txt
  1384. augustus/config/species/wheat/README.txt
  1385. augustus/config/species/wheat/wheat_exon_probs.pbl
  1386. augustus/config/species/wheat/wheat_igenic_probs.pbl
  1387. augustus/config/species/wheat/wheat_intron_probs.pbl
  1388. augustus/config/species/wheat/wheat_parameters.cfg
  1389. augustus/config/species/wheat/wheat_utr_probs.pbl
  1390. augustus/config/species/wheat/wheat_weightmatrix.txt
  1391. augustus/config/species/yarrowia_lipolytica/yarrowia_lipolytica_exon_probs.pbl
  1392. augustus/config/species/yarrowia_lipolytica/yarrowia_lipolytica_igenic_probs.pbl
  1393. augustus/config/species/yarrowia_lipolytica/yarrowia_lipolytica_intron_probs.pbl
  1394. augustus/config/species/yarrowia_lipolytica/yarrowia_lipolytica_metapars.cfg
  1395. augustus/config/species/yarrowia_lipolytica/yarrowia_lipolytica_metapars.utr.cfg
  1396. augustus/config/species/yarrowia_lipolytica/yarrowia_lipolytica_parameters.cfg
  1397. augustus/config/species/yarrowia_lipolytica/yarrowia_lipolytica_utr_probs.pbl
  1398. augustus/config/species/yarrowia_lipolytica/yarrowia_lipolytica_weightmatrix.txt
  1399. augustus/config/species/zebrafish/README.TXT
  1400. augustus/config/species/zebrafish/zebrafish_exon_probs.pbl
  1401. augustus/config/species/zebrafish/zebrafish_exon_probs.pbl.HMM
  1402. augustus/config/species/zebrafish/zebrafish_igenic_probs.pbl
  1403. augustus/config/species/zebrafish/zebrafish_igenic_probs.pbl.HMM
  1404. augustus/config/species/zebrafish/zebrafish_intron_probs.pbl
  1405. augustus/config/species/zebrafish/zebrafish_intron_probs.pbl.HMM
  1406. augustus/config/species/zebrafish/zebrafish_metapars.cfg
  1407. augustus/config/species/zebrafish/zebrafish_metapars.utr.cfg
  1408. augustus/config/species/zebrafish/zebrafish_parameters.cfg
  1409. augustus/config/species/zebrafish/zebrafish_weightmatrix.txt
  1410. augustus/scripts/PF00225_full.blocks.txt
  1411. augustus/scripts/PF00225_seed.blocks.txt
  1412. augustus/scripts/README.autoAug
  1413. augustus/scripts/SplicedAlignment.pm
  1414. augustus/scripts/aa2nonred.pl
  1415. augustus/scripts/add_name_to_gff3.pl
  1416. augustus/scripts/augustify.py
  1417. augustus/scripts/augustus2browser.pl
  1418. augustus/scripts/augustus2gbrowse.pl
  1419. augustus/scripts/autoAug.pl
  1420. augustus/scripts/autoAugPred.pl
  1421. augustus/scripts/autoAugTrain.pl
  1422. augustus/scripts/bamToWig.py
  1423. augustus/scripts/bedgraph2wig.pl
  1424. augustus/scripts/blat2gbrowse.pl
  1425. augustus/scripts/blat2hints.pl
  1426. augustus/scripts/block2prfl.pl
  1427. augustus/scripts/cegma2gff.pl
  1428. augustus/scripts/checkParamArchive.pl
  1429. augustus/scripts/checkUTR
  1430. augustus/scripts/cleanDOSfasta.pl
  1431. augustus/scripts/clusterAndSplitGenes.pl
  1432. augustus/scripts/compare_masking.pl
  1433. augustus/scripts/computeFlankingRegion.pl
  1434. augustus/scripts/createAugustusJoblist.pl
  1435. augustus/scripts/del_from_prfl.pl
  1436. augustus/scripts/evalCGP.pl
  1437. augustus/scripts/eval_dualdecomp.pl
  1438. augustus/scripts/eval_multi_gtf.pl
  1439. augustus/scripts/executeTestCGP.py
  1440. augustus/scripts/exonerate2hints.pl
  1441. augustus/scripts/exoniphyDb2hints.pl
  1442. augustus/scripts/extractAnno.py
  1443. augustus/scripts/extractTranscriptEnds.pl
  1444. augustus/scripts/filter-ppx.pl
  1445. augustus/scripts/filterGenes.pl
  1446. augustus/scripts/filterGenesIn.pl
  1447. augustus/scripts/filterGenesIn_mRNAname.pl
  1448. augustus/scripts/filterGenesOut_mRNAname.pl
  1449. augustus/scripts/filterInFrameStopCodons.pl
  1450. augustus/scripts/filterMaf.pl
  1451. augustus/scripts/filterPSL.pl
  1452. augustus/scripts/filterShrimp.pl
  1453. augustus/scripts/filterSpliceHints.pl
  1454. augustus/scripts/findGffNamesInFasta.pl
  1455. augustus/scripts/findRepetitiveProtSeqs.py
  1456. augustus/scripts/fix_in_frame_stop_codon_genes.py
  1457. augustus/scripts/fix_joingenes_gtf.pl
  1458. augustus/scripts/gbSmallDNA2gff.pl
  1459. augustus/scripts/gbrowse.conf
  1460. augustus/scripts/gbrowseold2gff3.pl
  1461. augustus/scripts/getAnnoFasta.pl
  1462. augustus/scripts/getAnnoFastaFromJoingenes.py
  1463. augustus/scripts/getLinesMatching.pl
  1464. augustus/scripts/get_loci_from_gb.pl
  1465. augustus/scripts/gff2gbSmallDNA.pl
  1466. augustus/scripts/gff2ps_mycustom
  1467. augustus/scripts/gffGetmRNA.pl
  1468. augustus/scripts/gp2othergp.pl
  1469. augustus/scripts/gtf2aa.pl
  1470. augustus/scripts/gtf2bed.pl
  1471. augustus/scripts/gtf2gff.pl
  1472. augustus/scripts/gth2gtf.pl
  1473. augustus/scripts/hal2maf_split.pl
  1474. augustus/scripts/helpMod.pm
  1475. augustus/scripts/joinPeptides.pl
  1476. augustus/scripts/join_aug_pred.pl
  1477. augustus/scripts/join_mult_hints.pl
  1478. augustus/scripts/maf2conswig.pl
  1479. augustus/scripts/makeMatchLists.pl
  1480. augustus/scripts/makeUtrTrainingSet.pl
  1481. augustus/scripts/maskNregions.pl
  1482. augustus/scripts/merge_masking.pl
  1483. augustus/scripts/moveParameters.pl
  1484. augustus/scripts/msa2prfl.pl
  1485. augustus/scripts/new_species.pl
  1486. augustus/scripts/opt_init_and_term_probs.pl
  1487. augustus/scripts/optimize_augustus.pl
  1488. augustus/scripts/parseSim4Output.pl
  1489. augustus/scripts/partition_gtf2gb.pl
  1490. augustus/scripts/pasapolyA2hints.pl
  1491. augustus/scripts/peptides2alternatives.pl
  1492. augustus/scripts/peptides2hints.pl
  1493. augustus/scripts/phastconsDB2hints.pl
  1494. augustus/scripts/polyA2hints.pl
  1495. augustus/scripts/prints2prfl.pl
  1496. augustus/scripts/pslMap.pl
  1497. augustus/scripts/randomSplit.pl
  1498. augustus/scripts/rename_species.pl
  1499. augustus/scripts/retroDB2hints.pl
  1500. augustus/scripts/rmRedundantHints.pl
  1501. augustus/scripts/runAllSim4.pl
  1502. augustus/scripts/samMap.pl
  1503. augustus/scripts/scipiogff2gff.pl
  1504. augustus/scripts/setStopCodonFreqs.pl
  1505. augustus/scripts/simpleFastaHeaders.pl
  1506. augustus/scripts/simplifyFastaHeaders.pl
  1507. augustus/scripts/splitMfasta.pl
  1508. augustus/scripts/split_wiggle.pl
  1509. augustus/scripts/stringtie2fa.py
  1510. augustus/scripts/summarizeACGTcontent.pl
  1511. augustus/scripts/transMap2hints.pl
  1512. augustus/scripts/uniquePeptides.pl
  1513. augustus/scripts/utrgff2gbrowse.pl
  1514. augustus/scripts/webserver-results.head
  1515. augustus/scripts/webserver-results.tail
  1516. augustus/scripts/weedMaf.pl
  1517. augustus/scripts/wig2hints.pl
  1518. augustus/scripts/wigchoose.pl
  1519. augustus/scripts/writeResultsPage.pl
  1520. augustus/scripts/yaml2gff.1.4.pl
  1521. bin/augustus
  1522. bin/etraining
  1523. bin/fastBlockSearch
  1524. bin/getSeq
  1525. bin/load2db
  1526. bin/prepareAlign
  1527. @owner
  1528. @group
  1529. @mode
Collapse this list.
Dependency lines:
  • augustus-gene-prediction>0:biology/augustus
To install the port:
cd /usr/ports/biology/augustus/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/augustus
  • pkg install augustus-gene-prediction
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: augustus-gene-prediction
Flavors: there is no flavor information for this port.
distinfo:
TIMESTAMP = 1669409399 SHA256 (Gaius-Augustus-Augustus-v3.5.0_GH0.tar.gz) = 5ed6ce6106303b800c5e91d37a250baff43b20824657b853ae04d11ad8bdd686 SIZE (Gaius-Augustus-Augustus-v3.5.0_GH0.tar.gz) = 225918930

Packages (timestamps in pop-ups are UTC):
augustus-gene-prediction
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest3.5.0_83.5.0_8-3.5.0_83.5.0_8---
FreeBSD:13:quarterly3.5.0_63.5.0_6--3.5.0_6-3.5.0_6-
FreeBSD:14:latest3.5.0_83.5.0_8-3.5.0_83.5.0_8---
FreeBSD:14:quarterly3.5.0_63.5.0_6--3.5.0_6-3.5.0_6-
FreeBSD:15:latest3.5.0_83.5.0_8n/a3.5.0_8n/a-3.5.0_83.5.0_8
FreeBSD:15:quarterly--n/a-n/a---
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. gmake>=4.3 : devel/gmake
  2. python3.9 : lang/python39
  3. perl5>=5.36<5.37 : lang/perl5.36
Test dependencies:
  1. python3.9 : lang/python39
Runtime dependencies:
  1. samtools : biology/samtools
  2. python3.9 : lang/python39
  3. perl5>=5.36<5.37 : lang/perl5.36
Library dependencies:
  1. libbamtools.so : biology/bamtools
  2. libboost_iostreams.so : devel/boost-libs
  3. libcolamd.so : math/suitesparse-colamd
  4. libgsl.so : math/gsl
  5. libhts.so : biology/htslib
  6. liblpsolve55.so : math/lp_solve
  7. libmysqlpp.so : databases/mysql++
  8. libmysqlclient.so.21 : databases/mysql80-client
  9. libsqlite3.so : databases/sqlite3
There are no ports dependent upon this port

Configuration Options:
No options to configure
Options name:
biology_augustus
USES:
gmake localbase:ldflags mysql perl5 python sqlite shebangfix
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
Collapse this list.
  1. https://codeload.github.com/Gaius-Augustus/Augustus/tar.gz/v3.5.0?dummy=/
Collapse this list.

Number of commits found: 10

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
3.5.0_8
28 Jan 2024 12:02:23
commit hash: 68a725452a341366c504bf411bfda2b9b9f983ebcommit hash: 68a725452a341366c504bf411bfda2b9b9f983ebcommit hash: 68a725452a341366c504bf411bfda2b9b9f983ebcommit hash: 68a725452a341366c504bf411bfda2b9b9f983eb files touched by this commit
Thierry Thomas (thierry) search for other commits by this committer
*/*: bump PORTREVISION after the upgrade to SuiteSparse
3.5.0_7
13 Jan 2024 10:19:22
commit hash: 0f35d118f29c44a286226933a85df4a528c31a01commit hash: 0f35d118f29c44a286226933a85df4a528c31a01commit hash: 0f35d118f29c44a286226933a85df4a528c31a01commit hash: 0f35d118f29c44a286226933a85df4a528c31a01 files touched by this commit
Thierry Thomas (thierry) search for other commits by this committer
*/*: bump PORTREVISION after the upgrade of SuiteSparse to v7.5.0
3.5.0_6
31 Dec 2023 14:31:11
commit hash: 41c2a6b1f7bd0cc66c00e8d7e16c6da901742192commit hash: 41c2a6b1f7bd0cc66c00e8d7e16c6da901742192commit hash: 41c2a6b1f7bd0cc66c00e8d7e16c6da901742192commit hash: 41c2a6b1f7bd0cc66c00e8d7e16c6da901742192 files touched by this commit
Thierry Thomas (thierry) search for other commits by this committer
*/*: chase the upgrade of SuiteSparse
3.5.0_5
15 Oct 2023 09:03:17
commit hash: c32596f5745214609cfa03b727bd4702a5d26f00commit hash: c32596f5745214609cfa03b727bd4702a5d26f00commit hash: c32596f5745214609cfa03b727bd4702a5d26f00commit hash: c32596f5745214609cfa03b727bd4702a5d26f00 files touched by this commit
Thierry Thomas (thierry) search for other commits by this committer
*/*: chase the upgrade of SuiteSparse
3.5.0_4
20 Sep 2023 17:57:40
commit hash: a0ed0dce34341e30a6c479535c68fae987840c91commit hash: a0ed0dce34341e30a6c479535c68fae987840c91commit hash: a0ed0dce34341e30a6c479535c68fae987840c91commit hash: a0ed0dce34341e30a6c479535c68fae987840c91 files touched by this commit
Thierry Thomas (thierry) search for other commits by this committer
/*: bump PORTREVISION after the upgrade of SuiteSparse
3.5.0_3
06 Aug 2023 21:53:03
commit hash: 46e066a42eb84b1a101b8870da0f6faae6c48c87commit hash: 46e066a42eb84b1a101b8870da0f6faae6c48c87commit hash: 46e066a42eb84b1a101b8870da0f6faae6c48c87commit hash: 46e066a42eb84b1a101b8870da0f6faae6c48c87 files touched by this commit
Muhammad Moinur Rahman (bofh) search for other commits by this committer
biology/augustus: Fix build with llvm16

Approved by:	portmgr (blanket)
Sponsored by:	The FreeBSD Foundation
3.5.0_3
01 Jul 2023 16:11:11
commit hash: 823182b45144924163f227529c9d42270601cab4commit hash: 823182b45144924163f227529c9d42270601cab4commit hash: 823182b45144924163f227529c9d42270601cab4commit hash: 823182b45144924163f227529c9d42270601cab4 files touched by this commit
Thierry Thomas (thierry) search for other commits by this committer
*/*: bump PORTREVISION after the upgrade of SuiteSparse
3.5.0_2
23 Apr 2023 09:09:58
commit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5b files touched by this commit
Gerald Pfeifer (gerald) search for other commits by this committer
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
3.5.0_1
19 Jan 2023 16:45:37
commit hash: 112013ae642a41807695f31144ed4113e3368aa6commit hash: 112013ae642a41807695f31144ed4113e3368aa6commit hash: 112013ae642a41807695f31144ed4113e3368aa6commit hash: 112013ae642a41807695f31144ed4113e3368aa6 files touched by this commit
Thierry Thomas (thierry) search for other commits by this committer
math/suitesparse*: bump PORTREVISION of dependant ports
3.5.0
25 Nov 2022 23:55:09
commit hash: 8b43ef57fd38af532b6619eaade5b35b053b4afdcommit hash: 8b43ef57fd38af532b6619eaade5b35b053b4afdcommit hash: 8b43ef57fd38af532b6619eaade5b35b053b4afdcommit hash: 8b43ef57fd38af532b6619eaade5b35b053b4afd files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
biology/augustus: New port: Genome annotation tool

Number of commits found: 10